| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 469,318 – 469,435 |
| Length | 117 |
| Max. P | 0.636181 |
| Location | 469,318 – 469,435 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.26 |
| Mean single sequence MFE | -35.54 |
| Consensus MFE | -24.02 |
| Energy contribution | -23.88 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 469318 117 - 22224390 GGCCAACGACUUUAAGACUGAGGCGCUCAGCGCCCGGGAGCAGCUAGUUCUCGACAACAAGACGCAGAAAGAAAAGAUCAGACUGUUGGAGCAGCAGCUUGAAAAACUUAC---CAAACA ((........((((((.(((((((((...)))))(((((((.....)))))))........................)))).((((((...)))))))))))).......)---)..... ( -29.16) >DroGri_CAF1 1874 117 - 1 GGCCAACGAUUUCAAGACUGAGGCGCUCAGCGCACGCGAGCAGCUCGUGCUCGAUAACAAAUUACAAAAGGACAAGAUUCGGCUGCUCGAACAGCAGCUGGACAAGUUAAC---CAAGCA ((..(((...........((((((((...)))).((((((...))))))))))........................((((((((((.....))))))))))...)))..)---)..... ( -32.10) >DroWil_CAF1 1202 119 - 1 UGCCAAUGAUUUCAAGACUGAGGCGCUUAGCGCUCGGGAGCAGCUGCUGCUCGAGAAUAAAACGCAGAAGGAGAAAAUACGAUUGCUGGAACAGCAAUUGGACAAACUGAACACU-AAAA (((......((((....(((((.(((...))))))))((((((...)))))))))).......))).............(((((((((...)))))))))...............-.... ( -31.62) >DroMoj_CAF1 1445 117 - 1 UGCCAACGAUUUCAAGACUGAGGCGCUCAGCGCACGCGAGCAGCUGGUGCUCGACAACAAGACGCAAAAGGAAAAAAUCCGGCUGCUCGAACAGCAGCUGGACAAACUAAC---CAAACA .(((.................)))(..((((((...((((((((((((((((........)).)))............)))))))))))....)).))))..)........---...... ( -36.23) >DroAna_CAF1 1270 117 - 1 GGCGAACGACUUCAAGACUGAGGCGCUCAGCGCCCGGGAGCAGCUGGUGCUCGACAACAAGACGCAGAAGGAGAAGAUCCAUCUCCUGGAGCAGCAGCUCGACAAGCUAAC---CAAGCA .(((((....)))....(((.(((((...))))))))..))(((((.((((((....)..........((((((.......)))))).))))).)))))......(((...---..))). ( -38.60) >DroPer_CAF1 1226 120 - 1 UGCAAACGACUUCAAGACUGAGGCGCUAAGCGCUCGCGAGCAGCUCCUGCUCGACAACAAGACGCAAAAGGAGAAGAUCCGGCUGCUGGAGCAGCAGCUGGAGAAGCUCACCCCUAAGCA .......(.(((((....))))))(((..(((((..(((((((...)))))))......)).))).....(((....(((((((((((...)))))))))))....))).......))). ( -45.50) >consensus GGCCAACGACUUCAAGACUGAGGCGCUCAGCGCACGCGAGCAGCUGGUGCUCGACAACAAGACGCAAAAGGAGAAGAUCCGGCUGCUGGAACAGCAGCUGGACAAACUAAC___CAAACA .........((((........(((((...)))))...(((((.....)))))....................)))).((((((((((.....)))))))))).................. (-24.02 = -23.88 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:41 2006