Locus 1158

Sequence ID X_DroMel_CAF1
Location 3,450,405 – 3,450,521
Length 116
Max. P 0.562285
window1861

overview

Window 1

Location 3,450,405 – 3,450,521
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -29.46
Consensus MFE -25.32
Energy contribution -25.80
Covariance contribution 0.48
Combinations/Pair 1.03
Mean z-score -1.26
Structure conservation index 0.86
SVM decision value 0.06
SVM RNA-class probability 0.562285
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3450405 116 - 22224390
UUUUACAGUGUAGAGAGAGGGUGGAAAGGCAAACCGAUCGACGCGUGACUCUCGCUUAAAAGCGUUUCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUUCUUGCUU-UUGCAU
.......(((((((((((((((.((..((....))..)).))((((((....((((....))))..)))))))))))))))))))....................(((..-..))). ( -32.50)
>DroSec_CAF1 22543 117 - 1
UUUUACAGUGUAGAGAGAGGAUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCUUAAAAGCAUUCCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUGCUUGCUUUUUGCAU
.......(((((((((((((((.((.((.((...(((.....))))).)).))(((....))).......)))))))))))))))....................(((.....))). ( -25.50)
>DroSim_CAF1 22625 117 - 1
UUUUACAGUGUAGAGAGAGGGUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCUUAAAAGCGUUCCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUGCUUGCUUUUUGCAU
.......((((((((((.(((((((((((.((((.((.....))(((.....((((....))))...)))))))))))))))).))(((........))).......)))))))))) ( -29.10)
>DroEre_CAF1 25815 115 - 1
UUUUCCAGUGUAGAGAGAGGGUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCU-AAAAGCGUUCCACGUUUUCUUUUUGCACCACUCUCCCUUCACUUUUCUUGUUU-UUCCAU
......((((..(((((.(((((((((((.((((.((.....))(((.....(((.-....)))...)))))))))))))))).)).)))))....))))..........-...... ( -31.00)
>DroYak_CAF1 23809 116 - 1
UUUUACAGUGUAGAGAGAGGGUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCUUAAAAGCGUUUCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUUCUUGUUU-UUGCAU
.......(((((((((.((((((((((((.((((.((.....))((((....((((....))))..)))))))))))))))))...(((........)))...))).)))-)))))) ( -29.20)
>consensus
UUUUACAGUGUAGAGAGAGGGUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCUUAAAAGCGUUCCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUUCUUGCUU_UUGCAU
.......(((((((((((((((.((..((....))..)).))(((((.....((((....))))...))))))))))))))))))....................(((.....))). (-25.32 = -25.80 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:44 2006