Locus 1157

Sequence ID X_DroMel_CAF1
Location 3,449,403 – 3,449,498
Length 95
Max. P 0.999905
window1860

overview

Window 0

Location 3,449,403 – 3,449,498
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.63
Mean single sequence MFE -31.36
Consensus MFE -31.04
Energy contribution -30.68
Covariance contribution -0.36
Combinations/Pair 1.26
Mean z-score -2.25
Structure conservation index 0.99
SVM decision value 4.47
SVM RNA-class probability 0.999905
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3449403 95 + 22224390
UCAGGCUAAUGACUGUGUUUCGUGUUCAUUAGACGGCGCAGGCCAAAAGAUAACGGCCACGUAAGCCAAGUUGGCCGAAAUGGGGACGAAAAACC
.(((........)))..((((((.((((((....(((....))).........(((((((.........).)))))).)))))).)))))).... ( -28.40)
>DroSec_CAF1 21556 95 + 1
UCAGGCUAAUGACUGCGUUUCGUGUUCAUUAGACGGCGCAGGCCAAAAGAUAACGGCCACGUUAACUAAGGUGGCCGAAAUGGGGACGAAAAACC
.(((........)))..((((((.((((((....(((....))).........(((((((.((....)).))))))).)))))).)))))).... ( -33.00)
>DroSim_CAF1 21656 95 + 1
UCAGGCUAAUGACUGCGUUUCGUGUUCAUUAGACGGCGCAGGCCAAAAGAUAACGGCCACGUUAACUAAGGUGGCCGAAAUGGGGACGAAAAACC
.(((........)))..((((((.((((((....(((....))).........(((((((.((....)).))))))).)))))).)))))).... ( -33.00)
>DroEre_CAF1 24814 94 + 1
UCGGGCUAAUGACUGUGCUUCGUGUUCAUUAGACGGCCCAGGCCAAAAGAUAAUGGCCACGUUAACUAAGGUGGCCGAGAUGG-GGCGAAAAACC
.(((........)))((((((((.(((.......(((....)))..........((((((.((....)).)))))))))))))-))))....... ( -29.90)
>DroYak_CAF1 22825 95 + 1
CCAGGCUAAUGACUGUGUUUCGUGUUCAUUAGACGGCCCAGGCCAAAAGAUAACGGCCAUGUUAACUAAGGUGGCUGAGAUGAGGACGAAAAACC
.(((........)))..((((((.((((((....(((....))).........(((((((.((....)).))))))).)))))).)))))).... ( -32.50)
>consensus
UCAGGCUAAUGACUGUGUUUCGUGUUCAUUAGACGGCGCAGGCCAAAAGAUAACGGCCACGUUAACUAAGGUGGCCGAAAUGGGGACGAAAAACC
.(((........)))..((((((.((((((....(((....))).........(((((((.((....)).))))))).)))))).)))))).... (-31.04 = -30.68 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:43 2006