| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,437,001 – 3,437,100 |
| Length | 99 |
| Max. P | 0.895145 |
| Location | 3,437,001 – 3,437,100 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 71.71 |
| Mean single sequence MFE | -17.33 |
| Consensus MFE | -11.29 |
| Energy contribution | -11.40 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3437001 99 + 22224390 -UAUAUAAUAUUCAAAUCCAAUGGGCAAAACCAAGCAGCAUUCCUGUUUCUAUCGAAAACCCGACGAAA---UUGCUUUGCGGAAAAACCCGCGUAUAGUUAA -(((((................((((((....((((((.....))))))...(((......))).....---)))))).((((......)))))))))..... ( -17.40) >DroSim_CAF1 9359 91 + 1 -UACCUAAUAUUUAAAUCCAAUG-GCAAAACCAAGCAGCGUUCCUGUUUUUAUCCAAACCCCAGCGAAA---UUGCUUUGCGGAAAAACCCGCGAA------- -....................((-(.....)))((((.((((...((((......))))...))))...---.))))((((((......)))))).------- ( -16.00) >DroYak_CAF1 10680 100 + 1 AAA--AAACAUUUCCAUAAAAUG-GCUAAGCCAAACAGCUGCACUGUUUUUAUCCAAACUUAAACGAAACCUUAACUUUGCGGAAAACCCCGCGAAUAGUUGA ...--.....((((.......((-((...))))(((((.....))))).................))))..((((((((((((......))))))..)))))) ( -18.60) >consensus _UA__UAAUAUUUAAAUCCAAUG_GCAAAACCAAGCAGCAUUCCUGUUUUUAUCCAAACCCCAACGAAA___UUGCUUUGCGGAAAAACCCGCGAAUAGUU_A ................................((((((.....))))))...........................(((((((......)))))))....... (-11.29 = -11.40 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:32 2006