Locus 1147

Sequence ID X_DroMel_CAF1
Location 3,433,458 – 3,433,554
Length 96
Max. P 0.915441
window1846

overview

Window 6

Location 3,433,458 – 3,433,554
Length 96
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.22
Mean single sequence MFE -28.14
Consensus MFE -14.34
Energy contribution -15.40
Covariance contribution 1.06
Combinations/Pair 1.25
Mean z-score -2.90
Structure conservation index 0.51
SVM decision value 1.10
SVM RNA-class probability 0.915441
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3433458 96 + 22224390
UGCAGCAAUUCCGG---CAGUAAUAAUAAUGUUUG--CCAUAAAGCUUAGGAAUUACACCUCAGCCAAAUGCAAAUGUUAUUGUGCUGU--------CUGGGG--U---CUCCA
.......(((((((---(((((.((((((((((((--(......(((.(((.......))).))).....)))))))))))))))))).--------))))))--)---..... ( -31.30)
>DroPse_CAF1 7157 110 + 1
UGCUGCAAUUUCAGGA-CACUAAUAAGUGCUCUUGCUCCAUAAAGCUUAAGAGUUACACCACAGCCAAAUGCAAAUGUUAUUUUGCUGCUGCCGUUCCUGGAGGUU---UCCCA
........((((((((-.((......(((((((((((......)))..))))).)))....((((.....(((((......))))).))))..))))))))))...---..... ( -26.60)
>DroSim_CAF1 5479 96 + 1
UGCAGCAAUUCCGG---CAGUAAUAAUAAUGUUUG--CCAUAAAGCUUAGGAAUUACACCUCAGCCAAAUGCAAAUGUUAUUGUGCUGU--------CUGGGG--U---CCUCA
.......(((((((---(((((.((((((((((((--(......(((.(((.......))).))).....)))))))))))))))))).--------))))))--)---..... ( -31.30)
>DroEre_CAF1 6000 96 + 1
UGCUACAAUUCCGG---CAGUAAUAAUAAUGUUUG--CCAUAAAGCUUAGGAAUUACACCUCAGACAAAUGCAAAUGUUAUUGUGCUGU--------CUGGGA--U---CCCCA
.......(((((((---(((((.((((((((((((--(.......((.(((.......))).))......)))))))))))))))))).--------))))))--)---..... ( -29.32)
>DroYak_CAF1 5699 89 + 1
-------AUUCCGG---CAGUAAUAAUAAUGUUUG--CCAUAAAGCUUAGGAAUUACACCUCAGACAAAUGCAAAUGUUAUUGUGCUGU--------CUGGGA--U---CCCAA
-------(((((((---(((((.((((((((((((--(.......((.(((.......))).))......)))))))))))))))))).--------))))))--)---..... ( -29.02)
>DroAna_CAF1 10173 103 + 1
UGCAGCAGUUCCGGGCUCCAUAAUAAUAAUGCUUG--CCAUAAAGCUUAGGAAUUACACCUUUGCCAAAUGCAAAUGUUAUUGUGUUGU------U-CCAGGG--UUUUCCUUA
............((((..((((((((((....(((--(......((..(((.......)))..)).....)))).))))))))))..))------)-).((((--....)))). ( -21.30)
>consensus
UGCAGCAAUUCCGG___CAGUAAUAAUAAUGUUUG__CCAUAAAGCUUAGGAAUUACACCUCAGCCAAAUGCAAAUGUUAUUGUGCUGU________CUGGGG__U___CCCCA
........((((((...(((((.((((((((((((...(((...(((.(((.......))).)))...)))))))))))))))))))).........))))))........... (-14.34 = -15.40 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:30 2006