| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,430,120 – 3,430,218 |
| Length | 98 |
| Max. P | 0.677675 |
| Location | 3,430,120 – 3,430,218 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 95.59 |
| Mean single sequence MFE | -25.14 |
| Consensus MFE | -19.36 |
| Energy contribution | -20.36 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3430120 98 - 22224390 AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAACAAAAUAUUUGUAAACAAAGCGGCUUCGUUUGAGAGACGAAAGCGAAUUUGAGCGCAA .....((.....))((((...(((((((.(((((((((..(......((((....)))))..))))).))))...(.(....))))))))).)))).. ( -24.60) >DroSec_CAF1 2423 97 - 1 AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA-AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGUGAGCCGAAAGCGAAUUUGAGCGCAA .....((.....))((((...(((((((((...)).((..-......((((....)))).((((((.......))))))...))))))))).)))).. ( -25.90) >DroSim_CAF1 1382 95 - 1 AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA-AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGGGAGCCGAAAGCGAAUUUGAG--CAA ....(((....(((((....))....((((((((((((..-......((((....))))...))))).))))))))))....)))........--... ( -27.70) >DroEre_CAF1 2716 97 - 1 GGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA-AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGAGAGCCGAAAGCUAUUUUGAGCGCAA .....((.....))((((.((((((((((....)))....-.....)))))))..(((((..((((((..(....).)).))))..))))).)))).. ( -23.20) >DroYak_CAF1 2468 97 - 1 AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA-AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGCGAGCCGAAAGCUAACUUGAGCGCAA .....((.....))((((........(((....)))((..-......((((....)))).(((((.((....)))))))...))........)))).. ( -24.30) >consensus AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA_AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGAGAGCCGAAAGCGAAUUUGAGCGCAA .....((.....))((((...((((((((....)))((.........((((....)))).((((((.......))))))...))..))))).)))).. (-19.36 = -20.36 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:29 2006