| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,413,780 – 3,413,870 |
| Length | 90 |
| Max. P | 0.509256 |
| Location | 3,413,780 – 3,413,870 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 70.96 |
| Mean single sequence MFE | -16.03 |
| Consensus MFE | -11.40 |
| Energy contribution | -11.65 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3413780 90 + 22224390 CCAACAGCCGACAUUUGGCACAAAUCGCUGAAUGGAUUUGUUUCCAGCCC--UC--ACCAAAAAGGGACCCCCCCCCCCCC----CUUAUGCCGGCAU ......((((.(((..((.(((((((........)))))))......(((--(.--.......)))).............)----)..))).)))).. ( -23.00) >DroSim_CAF1 61659 89 + 1 CCAACAGCCGACAUUUGGCACAAAUCGCUGAAUGGAUUUGUUUCCAGCGC--UC--ACCAAAACGGACCCCCCUUUGCCCCAUUCCAUGUGCC----- ................((((((....((....((((......))))..))--..--........(((................))).))))))----- ( -15.79) >DroEre_CAF1 71796 75 + 1 CCAACAGCCGACAUUUGGCACAAAUCGCUGAAUGGAUUUGUUUCCAGACCCCCUUCCCCCAUUUGGACCCCCGUU----------------------- ......(((((...)))))(((((((........))))))).((((((.............))))))........----------------------- ( -13.82) >DroYak_CAF1 62808 82 + 1 CCAACUGCCGACAUUUGGCACAAAUCGCUGAACGGAUUUGCUUCCAGCCUCCCC--ACCAAAACGGACCCCCUUUUUCCCCAUU-------------- ((...((((((...))))))((((((........))))))..............--........))..................-------------- ( -11.50) >consensus CCAACAGCCGACAUUUGGCACAAAUCGCUGAAUGGAUUUGUUUCCAGCCC__CC__ACCAAAACGGACCCCCCUUU_CCCC_________________ ((....(((((...)))))(((((((........))))))).......................))................................ (-11.40 = -11.65 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:23 2006