Locus 1141

Sequence ID X_DroMel_CAF1
Location 3,405,497 – 3,405,594
Length 97
Max. P 0.824483
window1836

overview

Window 6

Location 3,405,497 – 3,405,594
Length 97
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 76.57
Mean single sequence MFE -18.62
Consensus MFE -4.34
Energy contribution -5.38
Covariance contribution 1.04
Combinations/Pair 1.18
Mean z-score -1.91
Structure conservation index 0.23
SVM decision value 0.69
SVM RNA-class probability 0.824483
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3405497 97 + 22224390
AUAUCCCAAAAAAUAGCCAACA-AAUAGUACUAAGCUGGUUAACACAAGAAAACU--AUGUAUACUAGCCUGCAGGCUAGAUCUUUGAUCACU---UAAGUAU
......................-....((((((((.(((((((.(((((....))--.)))...((((((....))))))....)))))))))---).))))) ( -18.90)
>DroSec_CAF1 51904 90 + 1
AUAUCCG-AAAACUAGCCAACA-AAUAGAACUAAGCUGGUUAACGCAAAGAAACU--AACU----UGGUCUGCAGGCUA--UCUUUGGUUAAU---UAAAAAA
.((.(((-((...(((((....-..((((.(((((.(((((..........))))--).))----)))))))..)))))--..))))).))..---....... ( -18.30)
>DroSim_CAF1 53598 90 + 1
AUAUCCG-AAAACUAGCCAACA-AAUAGUACCAAGCUGGUUAACGCAAGGAAGCU--AACU----UGGUCUGCAGGCUA--UCUUUGGUUAAU---UAAAAAA
.((.(((-((...(((((....-..(((.((((((.(((((..(....)..))))--).))----)))))))..)))))--..))))).))..---....... ( -26.10)
>DroEre_CAF1 63578 93 + 1
AUAUCCG-AAAAAUAGCCAACA-AAUAGUACUAAGCUG-UUAAAACUGAGAAACUAUAUCC----UAGUCCGCAGGAUG--UGUUUAGUUAAUGUGUUUA-GU
.......-..............-......(((((((((-(((..((((((....(((((((----(.(....)))))))--))))))))))))).)))))-)) ( -16.90)
>DroYak_CAF1 54572 91 + 1
AUAUCCG-AAAAAUAGCCAACAAAAUAGUACUAAGCUG-UUAACACAUGGAAGUUGUAUCU----UAGUCAGCAGGAUA--UCAUUAGUUACU---UGAA-AU
((((((.-........(((....((((((.....))))-))......)))..((((.....----....)))).)))))--)...........---....-.. ( -12.90)
>consensus
AUAUCCG_AAAAAUAGCCAACA_AAUAGUACUAAGCUGGUUAACACAAGGAAACU__AUCU____UAGUCUGCAGGCUA__UCUUUGGUUAAU___UAAA_AU
.............(((((((.....((((.....))))..........................((((((....))))))....)))))))............ ( -4.34 =  -5.38 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:22 2006