Locus 1139

Sequence ID X_DroMel_CAF1
Location 3,395,444 – 3,395,545
Length 101
Max. P 0.768215
window1831

overview

Window 1

Location 3,395,444 – 3,395,545
Length 101
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 84.51
Mean single sequence MFE -28.57
Consensus MFE -22.13
Energy contribution -22.35
Covariance contribution 0.22
Combinations/Pair 1.11
Mean z-score -2.35
Structure conservation index 0.77
SVM decision value 0.52
SVM RNA-class probability 0.768215
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3395444 101 - 22224390
--CUUUGCCAUACGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCAACGUGCAGGGACUCCAAUUUCGAUUCCC-----CAUACCCA
--...........((-(((((((((.....)))))))....(((.(((......))).)))..))))...(((..((((.((.......)).))))-----..)))... ( -24.80)
>DroSec_CAF1 42014 91 - 1
--CUUUGCCGUACGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGAUUC---------------
--(((((((((.(((-(((((((((.....)))))))....(((.(((......))).)))..)))))))).))))))................--------------- ( -30.40)
>DroSim_CAF1 41902 91 - 1
--CUUUGCCGUACGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGAUUC---------------
--(((((((((.(((-(((((((((.....)))))))....(((.(((......))).)))..)))))))).))))))................--------------- ( -30.40)
>DroEre_CAF1 52968 106 - 1
--CCUUGCCGUAUGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGUUUCCCAUUGCCAUUGCCA
--(((((((((.(((-(((((((((.....)))))))....(((.(((......))).)))..)))))))).))))))............................... ( -31.10)
>DroYak_CAF1 44481 88 - 1
--CUUUGCCGUAUGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGA------------------
--(((((((((.(((-(((((((((.....)))))))....(((.(((......))).)))..)))))))).)))))).............------------------ ( -28.30)
>DroAna_CAF1 79520 99 - 1
CCGUUUGCUGUUUGGACUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGAAG-CGACGUGCAGGGACUCCGAUGCCGGCUACGAUUC---------
.(((..((((.(((((.((((((((.....))))))))((((((.(((......))).))))))(-(.....))......)))))...)))).)))....--------- ( -26.40)
>consensus
__CUUUGCCGUACGG_CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGAUUC_______________
..(((((((((.(((.(((((((((.....)))))))....(((.(((......))).)))..)))))))).))))))............................... (-22.13 = -22.35 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:17 2006