Locus 1137

Sequence ID X_DroMel_CAF1
Location 3,371,993 – 3,372,087
Length 94
Max. P 0.500000
window1827

overview

Window 7

Location 3,371,993 – 3,372,087
Length 94
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 81.93
Mean single sequence MFE -21.73
Consensus MFE -11.91
Energy contribution -12.10
Covariance contribution 0.19
Combinations/Pair 1.19
Mean z-score -2.11
Structure conservation index 0.55
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3371993 94 + 22224390
AAUAAUAUUUUAUACACAUUGCUGUGUAUGC--UACCU----AAUGCCAUUCAAUGUGGCAACCAUCAUCGGCCAUUCAAAAAGGACUCCCUUUGAGGGC
..........((((((((....)))))))).--.....----..((((((.....))))))..........(((.(((((..(((....))))))))))) ( -23.50)
>DroSec_CAF1 19264 90 + 1
AAUAAUAUUUUAUACUCAUUGCUCUGUAUGC--UAACU----AA-GCCCUUCAAUAUGGCAACCA---UCGGCCAUUCAAAAGGGACUCCCUUUGAGGGC
..........(((((..........))))).--.....----..-((((((....(((((.....---...)))))...((((((...)))))))))))) ( -20.90)
>DroSim_CAF1 19187 90 + 1
AAUAAUAUUUUAUACACAUAGCUCUGUAUGC--UAACU----AA-GCCCUUCAAUAUGGCAACCA---UCGGCCAUUCAAAAAGGACUCCCUUUGAGGGC
..................((((.......))--))...----..-((((((....(((((.....---...)))))....(((((....))))))))))) ( -21.40)
>DroYak_CAF1 20864 95 + 1
ACUUAUGUUUUAUCGCUAUUCCUCUGCAUUGGCUAGCAAUGCUA--CCUUUUAAUGUGGCAACCA---UCGGGCAUUCAAAAAGGACUCCCUUUGAGGGC
...................(((((.((((((.....))))))..--((((((...(((.(.....---...).)))...)))))).........))))). ( -21.10)
>consensus
AAUAAUAUUUUAUACACAUUGCUCUGUAUGC__UAACU____AA_GCCCUUCAAUAUGGCAACCA___UCGGCCAUUCAAAAAGGACUCCCUUUGAGGGC
.............................................((((((....(((((...........)))))....(((((....))))))))))) (-11.91 = -12.10 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:14 2006