Locus 1131

Sequence ID X_DroMel_CAF1
Location 3,347,996 – 3,348,116
Length 120
Max. P 0.661566
window1817

overview

Window 7

Location 3,347,996 – 3,348,116
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.28
Mean single sequence MFE -41.85
Consensus MFE -22.04
Energy contribution -20.52
Covariance contribution -1.52
Combinations/Pair 1.50
Mean z-score -1.92
Structure conservation index 0.53
SVM decision value 0.27
SVM RNA-class probability 0.661566
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3347996 120 + 22224390
AUCUUGCGCUCCAGAAGGACAUUCUUUAGUCCUGUCUUCUGCUGCAGCUCGACGAUCACGUCGUUGAAACGCUCCUUCAGGCCCUCCCGUUCUGCCACCAGCGAGUCGUUGCGCAGGAUC
(((((((((..(((((((((........)))))....))))..)).((((((((((...))))))))(((((((((...(((...........)))...)).))).))))))))))))). ( -41.20)
>DroVir_CAF1 3408 120 + 1
AUCUUGCGCUCGAGCAGGACAUUCUUGAGGCCAGUCUUCUGCUGCAAUUCAACGAUGACCUCGUUGAAUCGAGCCUUUAGAUUGGCUCGCUCGCCAACGAGAGCAUCGUUGCGCAGCAAA
.((((((......)))))).......((((.....))))((((((....((((((((..(((((((...((((((........)))))).....)))))))..)))))))).)))))).. ( -51.30)
>DroGri_CAF1 4791 120 + 1
AUCUUGCGCUCGAGCAGCACAUUCUUGAGUCCCGUCUUUUGUUGCAAUUCAACGAUGACCUCGUUGAAGCGUGUCUUGAGUGUGGCACGCUCGCCAACGAGGGCAUCGUUGCGUAAUAGC
...((((((....((((((......((.....)).....)))))).....(((((((.((((((((.((((((((........))))))))...)))))))).))))))))))))).... ( -48.90)
>DroWil_CAF1 7888 120 + 1
AUCUUGCGCUCGAGCAAAACAUUCUUGAGUCCCGUCUUUUGCUGCAACUCAACGAUCACCUCAUUGAAGCGCUCCUUGAGUCCUUCGCGUUCGCUGACCAGAGCAUCGUUGCGCAAUAUG
...((((((.(((((.......((((((((..((.(....).))..)))))).))..........((((.((((...)))).))))))((((........)))).)))..)))))).... ( -32.10)
>DroMoj_CAF1 5098 120 + 1
AUCUUGCGCUCGAGCAGCACGUUCUUCAGGCCCGUCUUCUGUUGUAGCUCGACGAUGACCUCGUUGAAGCGCGCCUUCAGAUUGGCCCGCUCGCUGACCAGAGCAUCGUUGCGCAGCAGC
...((((((.(((((((.(((..(.....)..)))))((((...(((((((((((.....)))))))((((.(((........))).)))).))))..)))))).)))..)))))).... ( -42.20)
>DroAna_CAF1 16172 120 + 1
AUCUUCCUCUCCAGGAGGACGUUCUUGAGACCGGUCUUCUGCUGCAGCUCCACGAUGACGUCGUUGAAGCGCUCCUUGAGGCCCUCCCUCUCGGACACCAGGGAAUCGUUGCGAAGUAUA
..((((.....((((((..((.((....)).))..))))))..(((((((.(((((...))))).)).....((((((..(.((........)).)..))))))...))))))))).... ( -35.40)
>consensus
AUCUUGCGCUCGAGCAGGACAUUCUUGAGUCCCGUCUUCUGCUGCAACUCAACGAUGACCUCGUUGAAGCGCGCCUUGAGACCGGCCCGCUCGCCAACCAGAGCAUCGUUGCGCAGUAUC
...((((......)))).....................((((.((((((((((((.....))))))).....................((((........))))...))))))))).... (-22.04 = -20.52 +  -1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:05 2006