| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,347,207 – 3,347,325 |
| Length | 118 |
| Max. P | 0.990153 |
| Location | 3,347,207 – 3,347,325 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.17 |
| Mean single sequence MFE | -28.62 |
| Consensus MFE | -24.08 |
| Energy contribution | -24.56 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.84 |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.990153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3347207 118 - 22224390 CAAUGAAAAAUCC--CACCUUGGUAGGCGCAGAAAAUGUAAAUUGUUAGUGCUGCUUGGUUUCUUUAAGAAUUUAUUCAUUCUGUGCCUAUCUGGAGUGUAUUAUGUAAACUCCCCCGCC .............--......(((((((((((((...(((((((.((((.(((....)))....)))).)))))))...))))))))))))).(((((...........)))))...... ( -34.60) >DroSec_CAF1 2849 107 - 1 CAAUGAAAAAUCC--CACCUUGGUAGUCACAGAAAAUGUAAAUUGUUAGUGCUGCUUGGAUUCUUUAAGAAUUUAUUCAUUCUGUGCCUACCUGGAGUGUAUUAUGUA-A---------- .............--(((((.(((((.(((((((...(((((((.((((..((....)).....)))).)))))))...))))))).))))).)).))).........-.---------- ( -27.60) >DroSim_CAF1 2878 108 - 1 CAAUGAAAAAUCC--CACCUUGGUAGUCACAGAAAAUGUAAAUUGUUAGUGCUGCUUGGAUUCUUUAAGAAUUUAUUCAUUCUGUGCCUACCUGAAGUGUAUUAUGUAAA---------- .............--(((...(((((.(((((((...(((((((.((((..((....)).....)))).)))))))...))))))).)))))....)))...........---------- ( -25.10) >DroEre_CAF1 5953 111 - 1 CAAUAAAUAAUCC--CGCCUUUGUAGGCACAGAAAACGUAAAUUGGUAGUGGUGUUUAG-AACUUUAAGAAUUUAUUCAUUCUGUGCUUACCUGAAGUGUAUUACAUAAAAUCU------ .............--.((((((((((((((((((...(((((((..(((.(((......-.))))))..)))))))...))))))))))))..)))).))..............------ ( -25.50) >DroYak_CAF1 2967 113 - 1 CAAUUAAGAAUCCCUCGCCUUUGUAGGCACAGAAAAUGUAAAUUGCUAGUGCUCUUGAG-AACUUUAAGAAUUUAUUCAUUCUGUGCCUACCAGAAGUGUAUUAUUUGAGUUCU------ .......((((....(((.(((((((((((((((...(((((((((....)).((((((-...)))))))))))))...))))))))))).)))).)))....)))).......------ ( -30.30) >consensus CAAUGAAAAAUCC__CACCUUGGUAGGCACAGAAAAUGUAAAUUGUUAGUGCUGCUUGG_UUCUUUAAGAAUUUAUUCAUUCUGUGCCUACCUGAAGUGUAUUAUGUAAA_UC_______ ...............(((...(((((((((((((...(((((((.((((...............)))).)))))))...)))))))))))))....)))..................... (-24.08 = -24.56 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:04 2006