Locus 1128

Sequence ID X_DroMel_CAF1
Location 3,341,518 – 3,341,608
Length 90
Max. P 0.973055
window1814

overview

Window 4

Location 3,341,518 – 3,341,608
Length 90
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 77.64
Mean single sequence MFE -22.64
Consensus MFE -8.68
Energy contribution -10.28
Covariance contribution 1.60
Combinations/Pair 1.11
Mean z-score -2.48
Structure conservation index 0.38
SVM decision value 1.70
SVM RNA-class probability 0.973055
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3341518 90 - 22224390
UUUUCCACUAUUCGGUU--GAUAUCGAUAUACACAUCGUCGCGUCGAUGAUAUUUUUUCCGGCGCACAGUCACACUGAACAGCUGUUU--U-UUU
.....((((.(((((((--(((..((((......))))..((((((..((.....))..))))))...)))).)))))).)).))...--.-... ( -21.20)
>DroSec_CAF1 19067 90 - 1
UUUUCGAUUAAUCAGGU--GAUAUCGAUAUAU-CACCGUCGCGCCGGUGAUAUUU-UUCCGGCGCACAGUCACACUAAACAGCUGUUUUUU-UUU
.....((((.....(((--(((((....))))-))))((.(((((((.((....)-).)))))))))))))....................-... ( -28.50)
>DroSim_CAF1 20900 88 - 1
UUUUCGACUAAUCAGGU--GAUAUCGAUAUAU-CACCGUCGCGCCGGUGAUAUUU-UUCCGGCGCACAGUCACACUAAACAGCUGUUU--U-UUU
.....((((.....(((--(((((....))))-))))((.(((((((.((....)-).))))))))))))).................--.-... ( -30.80)
>DroEre_CAF1 19542 73 - 1
CUUGCCACCAUUCGGGCAAAAUAUCGAUAUAU-CGCCAU------------------UCCGGCGCACAGUCACACUGAACAGCUGUUU--U-UUU
.(((((........)))))......(((....-((((..------------------...))))....))).....((((....))))--.-... ( -14.10)
>DroYak_CAF1 19561 89 - 1
CUUUAAACUUUUCGGGG--GCUAUCGAUAUAA-CACCAUCGCGUCGAUGACAUUU-UUGCGGCGCACAGUCACACUGAACAGCUGUUU--UUUUU
.......((.(((((.(--(((...(((....-....)))((((((.........-...))))))..))))...))))).))......--..... ( -18.60)
>consensus
UUUUCCACUAUUCGGGU__GAUAUCGAUAUAU_CACCGUCGCGCCGAUGAUAUUU_UUCCGGCGCACAGUCACACUGAACAGCUGUUU__U_UUU
..............(((...((((....))))..)))...((((((.............))))))(((((...........)))))......... ( -8.68 = -10.28 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:02 2006