Locus 1127

Sequence ID X_DroMel_CAF1
Location 3,336,548 – 3,336,641
Length 93
Max. P 0.735603
window1813

overview

Window 3

Location 3,336,548 – 3,336,641
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.88
Mean single sequence MFE -22.65
Consensus MFE -14.94
Energy contribution -14.22
Covariance contribution -0.72
Combinations/Pair 1.25
Mean z-score -1.50
Structure conservation index 0.66
SVM decision value 0.44
SVM RNA-class probability 0.735603
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3336548 93 + 22224390
---------ACGUUGGCCUAUUUGGCUAUGAAACAUACCCGAUGGUGGCCAGCAAGAACAUAAUCUUGCUGUCCCAACUCUCUCGCUCCUCGCCCUCCUUCU
---------..(((((((...((((.((((...)))).)))).)))((.((((((((......)))))))).))))))......((.....))......... ( -25.80)
>DroPse_CAF1 22141 93 + 1
ACGGUUUCAACG------A--GUAGUUG-UUUACUCACCCGAUGGUGGCCAGCAGGAACAUGAUUUUGCUGUCCCAACUCUCGCGCUCUUCGCCCUCCUUCU
..((.......(------(--(.(((((-.....(((((....))))).((((((((......))))))))...))))))))(((.....)))))....... ( -23.90)
>DroSec_CAF1 14139 85 + 1
---------ACG------U--AUGGCUAUGAAACAUACCCAAUGGUGGCCAGCAGGAACAUGAUCUUGCUGUCCCAACUCUCCCGCUCCUCGCCCUCCUUCU
---------..(------(--(((.........)))))....(((.(((.(((((((......)))))))))))))........((.....))......... ( -19.50)
>DroSim_CAF1 15964 90 + 1
---------ACGUUG-CCU--AUAGCUAUGAAACAUACCCAAUGGUGGCCAGCACGAACAUGAUCUUGCUGUCCCAACUCUCCCGCUCCUCGCCCUCCUUCU
---------..((((-...--...(((((............)))))((.(((((.((......)).))))).))))))......((.....))......... ( -14.60)
>DroEre_CAF1 14596 90 + 1
---------GCUAUG-GCU--AUGGCUAUGGCACAUACCCAAUGGUGGCCAGCAAGAACAUGAUUUUGCUGUCCCAGCUCUCCCGCUCCUCGCCCUCCUUCU
---------((((((-((.--...))))))))...........((.(((((((((((......))))))))....(((......)))....)))..)).... ( -28.20)
>DroPer_CAF1 22649 93 + 1
ACGGUUUCAACG------A--GUAGUUG-UUUACUCACCCGAUGGUGGCCAGCAGGAACAUGAUUUUGCUGUCCCAACUCUCGCGCUCUUCGCCCUCCUUCU
..((.......(------(--(.(((((-.....(((((....))))).((((((((......))))))))...))))))))(((.....)))))....... ( -23.90)
>consensus
_________ACG______U__AUAGCUAUGAAACAUACCCAAUGGUGGCCAGCAGGAACAUGAUCUUGCUGUCCCAACUCUCCCGCUCCUCGCCCUCCUUCU
.......................(((..........(((....)))((.((((((((......)))))))).))..........)))............... (-14.94 = -14.22 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:01 2006