| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,335,405 – 3,335,509 |
| Length | 104 |
| Max. P | 0.556695 |
| Location | 3,335,405 – 3,335,509 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -19.38 |
| Energy contribution | -18.68 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3335405 104 - 22224390 AUAUAUAUA-UUUAC-CAU-UUCAGAGUGCUUCCGGAACAGGUCUGGCCUUCAUCAUCUUCACGGAGGCGAUCAAUCAGUUUCCGGGUGCACAACUCUGGGCUGUCC .........-.....-((.-((((((((((.((((((((.(((.(.((((((...........)))))).)...))).).))))))).))...)))))))).))... ( -30.20) >DroPse_CAF1 20253 104 - 1 UGUUUUGUU-UUUUU-CUU-UGCAGAGUGCCUCUGGCACUGGUCUGGCUUUCAUUAUAUUCACGGAGGCGAUCAAUCAGUUUCCAGGCGCACAGCUCUGGGCCGUUC .........-.....-...-..((((((((.(((((.((((((.(.((((((...........)))))).)...))))))..))))).))...))))))........ ( -27.30) >DroEre_CAF1 13455 104 - 1 ACUAUUAUU-AUUAC-UAU-UUCAGAGUGCUUCAGGAACAGGAUUGGCCUUCAUCAUCUUCACGGAGGCAAUCAAUCAGUUUCCGGGCGCUCAACUCUGGGCCGUCC .........-.....-...-....(((((((...((((...(((((((((((...........))))))...)))))...)))).)))))))............... ( -28.30) >DroWil_CAF1 222082 99 - 1 AUU----CC-AUUUC-CA--UUUAGAGUGCCUCGGGCACAGGACUGGCUUUCAUUAUCUUCACCGAGGCCAUCAAUCAAUUUCCUGGAGCCCAACUCUGGGCCGUUC ...----..-...((-((--......(((((...)))))..((.(((((((.............)))))))))...........))))(((((....)))))..... ( -26.62) >DroMoj_CAF1 29215 105 - 1 AAUUGUGUC-CUUCCCUUU-GGCAGAGCGCAUCUGGAACAGGGCUGGCUUUUAUCAUCUUUACUGAGGCGAUCAAUCAGUUUCCUGGCGCCCAGCUCUGGGCUGUGC ...((((..-((.((....-)).))..))))...((..((((((((((....(((..(((....)))..)))...((((....)))).).)))))))))..)).... ( -31.30) >DroAna_CAF1 18667 106 - 1 AUUUAUGGCUUUUGC-UUUCCACAGAGCGCCUCGGGCACUGGCCUGGCUUUUAUUAUCUUCACGGAGGCCAUUAAUCAGUUUCCCGGCGCCCAGCUCUGGGCUGUCC ....(((((((((((-((......))))(((..((((....)))))))...............))))))))).............((((((((....))))).))). ( -34.70) >consensus AUUUAUGUC_UUUAC_CAU_UUCAGAGUGCCUCGGGAACAGGACUGGCUUUCAUCAUCUUCACGGAGGCGAUCAAUCAGUUUCCGGGCGCCCAACUCUGGGCCGUCC ......................((((((((..((((.....(..((((((((...........))))))...))..).....))))..))...))))))........ (-19.38 = -18.68 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:59 2006