Locus 1123

Sequence ID X_DroMel_CAF1
Location 3,324,226 – 3,324,319
Length 93
Max. P 0.559940
window1809

overview

Window 9

Location 3,324,226 – 3,324,319
Length 93
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 83.57
Mean single sequence MFE -23.27
Consensus MFE -19.16
Energy contribution -19.97
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -1.46
Structure conservation index 0.82
SVM decision value 0.05
SVM RNA-class probability 0.559940
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3324226 93 - 22224390
UUUACAUUACAAUUAGAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCAUUCCCAUUCCGUUGGGU-------------A
...............((.((((((((((((((.......))))))))).(.(((.....))).))))))...))...((((......)))).-------------. ( -24.10)
>DroSec_CAF1 2071 105 - 1
UUUACUUUUCCAUUAGAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCAUUCCCAUUCCGCUGGGUAUCGCUUGCC-GUA
..(((..........((.((((((((((((((.......)))))))))((.(((.....))).)).....))))).))...........((((.....))))-))) ( -24.20)
>DroSim_CAF1 2072 105 - 1
UUUACUUUUCCAUUAGAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCAUUCCCAUUCCGCUGGGUAUCGCUUGCC-GUA
..(((..........((.((((((((((((((.......)))))))))((.(((.....))).)).....))))).))...........((((.....))))-))) ( -24.20)
>DroYak_CAF1 2132 96 - 1
UUUAUUCUUCCAUUACAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCGUGCGCA----------UAUCUCUUGCUUUUA
..........(((.....((((((((((((((.......))))))))).(.(((.....))).)))))).....))).(((----------.......)))..... ( -20.60)
>consensus
UUUACUUUUCCAUUAGAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCAUUCCCAUUCCGCUGGGUAUCGCUUGCC_GUA
..................((((((((((((((.......)))))))))((.(((.....))).)).....)))))..((((......))))............... (-19.16 = -19.97 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:57 2006