Locus 1121

Sequence ID X_DroMel_CAF1
Location 3,294,426 – 3,294,518
Length 92
Max. P 0.956736
window1807

overview

Window 7

Location 3,294,426 – 3,294,518
Length 92
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 67.55
Mean single sequence MFE -30.26
Consensus MFE -15.45
Energy contribution -14.80
Covariance contribution -0.65
Combinations/Pair 1.33
Mean z-score -2.03
Structure conservation index 0.51
SVM decision value 1.47
SVM RNA-class probability 0.956736
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3294426 92 - 22224390
GUAUGUUGUAUAUGAAUCACGGAUCGCUUAGAUCUGGAAACUUGUCCGGGCCACU-------------UGGCCAUAAAUCAGGCGGGGCGACAAUCGUGUACAAA
.....((((((((((.((.((((((.....))))))))...((((((.((((...-------------.))))......(....)))))))...)))))))))). ( -31.50)
>DroVir_CAF1 144636 99 - 1
GUAGAG-AGAUAUGAAUCGCAGCUAGGCUAA--CCCAAAACUUGUC-GCGCUAUUGAAGUAAGUGUUCGGGCCAUAAAUCAGCCGAGCCGGCGAUCGUGUCUU--
.....(-((((((((.((((.(((.((((..--.......((((..-(((((.........))))).)))).........)))).)))..)))))))))))))-- ( -30.57)
>DroSim_CAF1 40241 91 - 1
GUAUGUUGUAUAUGAAUCACGGAUCGCUUAGAUCUGGAAACUUGUGCGGGGCAUU-------------U-GCCAUAAAUCAGGCGGGGCGACAAUCGUGUACAAA
.....((((((((((.((.((((((.....)))))))).........(..((.((-------------(-(((........))))))))..)..)))))))))). ( -28.70)
>consensus
GUAUGUUGUAUAUGAAUCACGGAUCGCUUAGAUCUGGAAACUUGUCCGGGCCAUU_____________UGGCCAUAAAUCAGGCGGGGCGACAAUCGUGUACAAA
.....((((((((((......(.((((((.(..(((..........)))..)..................(((........))).)))))))..)))))))))). (-15.45 = -14.80 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:55 2006