Locus 1119

Sequence ID X_DroMel_CAF1
Location 3,288,147 – 3,288,237
Length 90
Max. P 0.536652
window1802

overview

Window 2

Location 3,288,147 – 3,288,237
Length 90
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 91.71
Mean single sequence MFE -15.90
Consensus MFE -14.61
Energy contribution -14.67
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.30
Structure conservation index 0.92
SVM decision value 0.01
SVM RNA-class probability 0.536652
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3288147 90 - 22224390
AUAACUGAUACCGAAAACUUGUUGCUAAAUUAGUGCAACUCAUUUGCAUUGAUUAAACUU-----AAUUCAUAUCUGAAUGCCCAUUUCAUUUGG
..........(((((....((..((..(((((((((((.....)))))))))))......-----.(((((....))))))).)).....))))) ( -15.30)
>DroSim_CAF1 33718 90 - 1
AAAACUGACACCGAAAACUUGUUGCUAAAUUAGUGCAAAUCAUUUGCAUUGAUUAAACUU-----AAUUCAUAUCUGAAUGCCCAUUUAAUUUGG
..........(((((....((..((..(((((((((((.....)))))))))))......-----.(((((....))))))).)).....))))) ( -15.40)
>DroEre_CAF1 60074 95 - 1
CAAACUGACACCGAAAACUUGUUGCUAAAUUAGUGCAAAUCAUUUGCAUUGAUUAAAUUGGCUAAACUUCAUAUCUGAAUGUCCAUUUAAUUUGG
..........(((((........(((((((((((((((.....))))))))))....)))))...((((((....)))).))........))))) ( -16.50)
>DroYak_CAF1 59883 90 - 1
CAAACUGACACCGAAAACUUGUUGCUAAAUUAGUGCAAAUCAUUUGCAUUGAUUAAACUU-----AAUUCAUAUCUGAAUGCUCAUUUAAUUUGG
..........(((((....((..((..(((((((((((.....)))))))))))......-----.(((((....))))))).)).....))))) ( -16.40)
>consensus
AAAACUGACACCGAAAACUUGUUGCUAAAUUAGUGCAAAUCAUUUGCAUUGAUUAAACUU_____AAUUCAUAUCUGAAUGCCCAUUUAAUUUGG
..........(((((....((..((..(((((((((((.....)))))))))))............(((((....))))))).)).....))))) (-14.61 = -14.67 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:51 2006