Locus 1118

Sequence ID X_DroMel_CAF1
Location 3,285,104 – 3,285,213
Length 109
Max. P 0.912467
window1801

overview

Window 1

Location 3,285,104 – 3,285,213
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.75
Mean single sequence MFE -37.47
Consensus MFE -26.29
Energy contribution -27.04
Covariance contribution 0.75
Combinations/Pair 1.17
Mean z-score -2.22
Structure conservation index 0.70
SVM decision value 1.08
SVM RNA-class probability 0.912467
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3285104 109 + 22224390
AUUGCAUAAUUUGGGGUAGUUCCUGUCACCCUU-----A------GGGGUCUUGAAAAGCAGCAACAGGCUGCGACAUGUCUGCUCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAAUU
...((((((((.(((((((..(.((((((((..-----.------.))))........(((((.....))))))))).).))))))).(((....))))))))))).............. ( -39.00)
>DroSim_CAF1 30147 114 + 1
AUUGCAUAACUUGGGGUGGUUCCUGGCACCCUUUCUACA------GAAAGAGAGAGAAGCAGCAACAGGCUGCGACAUGUCUGCCCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAACU
...((((((...((((..(..(.((.....((((((...------...))))))....(((((.....)))))..)).).)..))))((((....)))).)))))).............. ( -35.30)
>DroEre_CAF1 56891 120 + 1
AUUGUGUAACUCGGGGUGGUUCUUGUCACCCUUCCUAUGGAGUGAGGGUUCUUGAAAACCGGCAACAGGCUGCGACAUGUCUGCCCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAACU
..((((((....((((..(....(((((((((..((....))..)))))..........((((.....)))).))))...)..))))((((....))))....))))))........... ( -38.80)
>DroYak_CAF1 56625 120 + 1
AUUGUUUAACUUGGGGUGGUUCUUGGCACCCUUCCCAUAAAGAGAGGGUUCUUGAAAACCAGCAACAGGCUGCGACAUGUCUGCUCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAACU
...((((((((((..((((((.(..(.(((((..(......)..)))))..)..).))))).)..)))).((((.((((..((..(((....)))..))..))))))))....)))))). ( -36.80)
>consensus
AUUGCAUAACUUGGGGUGGUUCCUGGCACCCUUCCUAUA______GGGUUCUUGAAAACCAGCAACAGGCUGCGACAUGUCUGCCCCUGACAAGGGUCAAUUAUGCGCAUCAAUUAAACU
...((((((...(((((((..(.((((.(((..............)))..........(((((.....))))))))).).)))))))((((....)))).)))))).............. (-26.29 = -27.04 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:50 2006