| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,282,049 – 3,282,160 |
| Length | 111 |
| Max. P | 0.735991 |
| Location | 3,282,049 – 3,282,160 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.88 |
| Mean single sequence MFE | -35.83 |
| Consensus MFE | -23.49 |
| Energy contribution | -23.17 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.735991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3282049 111 - 22224390 AGACCCCACUGGACGUG------GACAUGGAUGCUCGUCAUUAUGGAUGUGCCACUUACCCUGUGGCAGCGCACGCGUUCAUUGUCUGUCUAAAAAAAAAAAAAAGAUGAUGAGCUA .....((((.....)))------)........((((((((((((((((.((((((.......))))))((....)))))))).......................)))))))))).. ( -31.50) >DroEre_CAF1 54194 115 - 1 AGAGCCCACUGGACAUGGACAUGGACAUGGAUGCUGGUCAUUAUGGAUGUGCCACUUACCCUGUGGCAG--CACGCGUUCAUUGUCUGUCUGACAAUGAGCGUUCAUUGAUGAGCCA ..((((((.((..(((....)))..)))))..)))(((((((((((.((((((((.......)))))).--)).((((((((((((.....))))))))))))))).)))))).)). ( -45.10) >DroYak_CAF1 53903 101 - 1 AGAGUCCACUGGACAUG------GACAUGGAUGCUCGCCAUUAUGGAUAUGCCACUUACCCUGUGGCAG--CACGCGUUCAUUGUCUAUCUGCGAA--------ACUUGAUGAGCCA (((((((...)))).((------(((((((((((...((.....))...((((((.......)))))).--...))))))).))))))))).....--------............. ( -30.90) >consensus AGAGCCCACUGGACAUG______GACAUGGAUGCUCGUCAUUAUGGAUGUGCCACUUACCCUGUGGCAG__CACGCGUUCAUUGUCUGUCUGAAAA__A_____AAUUGAUGAGCCA .........((((((........(((((((((((...((.....))...((((((.......))))))......))))))).))))))))))......................... (-23.49 = -23.17 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:48 2006