Locus 1115

Sequence ID X_DroMel_CAF1
Location 3,280,872 – 3,280,992
Length 120
Max. P 0.590712
window1798

overview

Window 8

Location 3,280,872 – 3,280,992
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.11
Mean single sequence MFE -24.16
Consensus MFE -21.01
Energy contribution -21.20
Covariance contribution 0.19
Combinations/Pair 1.09
Mean z-score -1.41
Structure conservation index 0.87
SVM decision value 0.11
SVM RNA-class probability 0.590712
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3280872 120 - 22224390
AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAACCAGCCAACAACUGGCCAAAAAAAAAAAGCGAGAUAUCGAUCGCGACAAGCAGUAGAUAUUCCCAGAAAGGCCU
.....((((.((((((((....(((((...((.....))..........((((.....))))............((((........))))))))).........)))))).))...)))) ( -29.12)
>DroSim_CAF1 26276 116 - 1
AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAACCAUCCAACAACUGCCCCAA----ACAAGCGAGAUAUCGAUCGCGACAAGCAGUAGAUAUUCCCAGAAAGGCCU
.....((((.((((((((......(((..........(((.........)))....(((((.....----....((((........)))).....))))).))))))))).))...)))) ( -25.74)
>DroEre_CAF1 52997 103 - 1
AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAAG-------------C--CCA--AAAGAAGUAAGAUAUCGAUCGCGACAAGCAGUGGAUAUUCUCAGAAAGGCCU
.....((((.(((((.......((.((........)).)).......-------------)--)).--..........((((((.((.((.....)).)).))))))....))...)))) ( -20.54)
>DroYak_CAF1 52773 118 - 1
AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAACCAUCCAACAACAGCCCCAA--AAAAAAGAGAGAUAUCGAUCGCGACAAGCAGUAGAUAUUCCCAGAAAGGCCU
.....((((.((((((((....(((((.(.(.((((((((.........)))...........(..--......).......))))).))))))).........)))))).))...)))) ( -21.22)
>consensus
AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAACCAUCCAACAACUGCCCCAA__AAAAAAGCGAGAUAUCGAUCGCGACAAGCAGUAGAUAUUCCCAGAAAGGCCU
.....((((.((((((((....(((((...((.....))...................................((((........))))))))).........)))))).))...)))) (-21.01 = -21.20 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:47 2006