Locus 1113

Sequence ID X_DroMel_CAF1
Location 3,267,927 – 3,268,047
Length 120
Max. P 0.652559
window1795

overview

Window 5

Location 3,267,927 – 3,268,047
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.88
Mean single sequence MFE -28.27
Consensus MFE -18.92
Energy contribution -20.03
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -1.69
Structure conservation index 0.67
SVM decision value 0.25
SVM RNA-class probability 0.652559
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3267927 120 - 22224390
GUUUUUUUGUUUUUUUUUUGUAUGUGUGUGUCGUCUUGCCGGAUUUUAUGGAAAUUGCGGCAACAUUUCGCACAUAUAUCCUGGGAGUUACUUCUCUUGGCCUACGCAAAAUGCCAAUUU
((..((((((.........(((((((((((..((.((((((((((((...)))))).)))))).))..))))))))))).(..((((......))))..).....)))))).))...... ( -34.10)
>DroEre_CAF1 46040 98 - 1
UGUGUUUU-----------------GUGUGUGUUCUGGCCGGAUUUUAUGGGAAUUGUGGCAACAUUUCGCACAUAUAUCUUGGGAGUUACUUCUCUGGGCCUACGCAAAAUGCC-----
.(((((((-----------------(((((......((((((((..((((((((..(((....)))))).).)))).))))..((((......)))).)))))))))))))))).----- ( -30.40)
>DroYak_CAF1 45117 103 - 1
UAUUUCUU-----------------GUGUGUGUUCUGGACGGAUUUUAUGGGAAUUGUGGCAACAUUUCGCACAUAUAUCUUGGGAGUUACUUCUCUUGGCCUACGCAAAAUGCCAAUUU
.......(-----------------(((((((((((....)))........(((..(((....)))))))))))))))....(((((....)))))(((((...........)))))... ( -20.30)
>consensus
UAUUUUUU_________________GUGUGUGUUCUGGCCGGAUUUUAUGGGAAUUGUGGCAACAUUUCGCACAUAUAUCUUGGGAGUUACUUCUCUUGGCCUACGCAAAAUGCCAAUUU
..........................((((((....((((((((..((((......(((....)))......)))).))))..((((......)))).))))))))))............ (-18.92 = -20.03 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:44 2006