Locus 1112

Sequence ID X_DroMel_CAF1
Location 3,264,682 – 3,264,786
Length 104
Max. P 0.957093
window1794

overview

Window 4

Location 3,264,682 – 3,264,786
Length 104
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 87.64
Mean single sequence MFE -38.92
Consensus MFE -30.81
Energy contribution -31.75
Covariance contribution 0.94
Combinations/Pair 1.04
Mean z-score -2.46
Structure conservation index 0.79
SVM decision value 1.47
SVM RNA-class probability 0.957093
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3264682 104 - 22224390
CAUAAGUUCCUUGGCGCACCACUGCCAGAACCACUCGGCAG-------ACCAUGUCUGUGCGUCGUCUGUCUGCCCCACCCAACGGGCACAGUGGUGCAAGUGCAUUGUUA
...............(((((((((............(((((-------((.((((....)))).)))))))(((((........))))))))))))))............. ( -38.20)
>DroSim_CAF1 16517 105 - 1
CAUAAGUUCCUUGGCGCACCACUGCCAGAACCACUCGGCAGUCUUUUGGCCAUGUCUGUG-----UCUGUCUGCCCCACCCAACGGGCACAGUGGUGCAAGGGCGCC-CUA
............(((((.((((((((((.....)).))))))...(((((((...(((((-----(((((.((.......)))))))))))))))).))))))))))-... ( -39.90)
>DroEre_CAF1 42987 104 - 1
CAUAAGUUCCUUGGCGCACCACUGCCAGCACCACUCGGCAGCCUUUCGGCCAUGUCUGUG-----UCUGUCUGCCCCACCCAACAGGCACAGUGGUGCAAGG-CCCC-UCA
.....(..((((((((......)))).(((((((..(((((((....)))..))))((((-----(((((.((.......))))))))))))))))))))))-..).-... ( -39.80)
>DroYak_CAF1 41817 104 - 1
CAUAAGUUCCUUGGCGCACCAGUGCCAGAACCACUCGGCAGCCUUUUGGCCAUGUCUGUG-----UCUGUCUGCCCCACCCAACGGGCACAGUGGUGCAAGG-CACC-UCA
.....((.(((((((((....))))).(.(((((..(((((((....)))..))))((((-----(((((.((.......)))))))))))))))).)))))-.)).-... ( -37.80)
>consensus
CAUAAGUUCCUUGGCGCACCACUGCCAGAACCACUCGGCAGCCUUUUGGCCAUGUCUGUG_____UCUGUCUGCCCCACCCAACGGGCACAGUGGUGCAAGG_CACC_UCA
...............(((((((((.((((..(((..(((((((....)))..)))).))).....))))..(((((........))))))))))))))............. (-30.81 = -31.75 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:43 2006