Locus 1111

Sequence ID X_DroMel_CAF1
Location 3,264,301 – 3,264,391
Length 90
Max. P 0.894900
window1793

overview

Window 3

Location 3,264,301 – 3,264,391
Length 90
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 70.67
Mean single sequence MFE -14.25
Consensus MFE -8.98
Energy contribution -8.97
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.63
SVM decision value 0.98
SVM RNA-class probability 0.894900
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3264301 90 + 22224390
-------AUAACAUAAACAUAA---UAUUUAACUUGUUCACAGUGUAGCUGUGCACAGCUUGCACCAACCACCAACACGCCCCUUUUUACGCCUCACUCC
-------...............---.................(((((((((....)))).)))))................................... ( -11.00)
>DroSim_CAF1 16141 82 + 1
-------AUAACA---ACAUAA---UAUGUAACUUGUUCACAGUGUAGCUG-GAACAGCUUGCAC----CACCACCACGCCCCCUUUUACGCCUCACUCC
-------......---......---..(((((.((((((.(((.....)))-)))))).))))).----............................... ( -13.60)
>DroEre_CAF1 42554 87 + 1
UCUCUUUUUGAGU--------ACUUUGAGUACCUUGUGCUCAGUGUAGCUG-GAGCAGCUUGCAC----CCCCACCACGCCCCCUUCUACGCCUCACCCC
........((((.--------....(((((((...)))))))((((((..(-(.((....((...----...))....))..))..)))))))))).... ( -19.80)
>DroYak_CAF1 41426 92 + 1
UCUCCUUUUGAAA---AAAAAAUAUCUAGUACCUUACUCCCAGUGUAGCUG-GAGCAGCUUGCAC----CCCCACCACGCCCCUUUUUUCGUCUCACCCC
.........((((---(((........((((...))))....(((((((((-...)))).)))))----..............))))))).......... ( -12.60)
>consensus
_______AUAACA___ACAUAA___UAAGUAACUUGUUCACAGUGUAGCUG_GAACAGCUUGCAC____CACCACCACGCCCCCUUUUACGCCUCACCCC
..........................................(((((((((....)))).)))))................................... ( -8.98 =  -8.97 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:42 2006