| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 459,168 – 459,263 |
| Length | 95 |
| Max. P | 0.522186 |
| Location | 459,168 – 459,263 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.80 |
| Mean single sequence MFE | -14.47 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.42 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 459168 95 - 22224390 ------CCGUGUUUUCCGA-----UUGCCCACC-CCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGUAUACU ------..((((.....((-----(((((....-..)))(((((...........)))))..))))((((((((..........))))))))..........)))). ( -13.40) >DroSec_CAF1 61355 96 - 1 ------CCGUGUUUUCCGA-----UUGCCCACCCCCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGUAUACU ------..((((.......-----............(((((((............)))))))....((((((((..........))))))))..........)))). ( -13.00) >DroSim_CAF1 40388 96 - 1 ------CCGUGUUUUCCGA-----UUGCCCACCCCCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAGAAAACCUCAUUCACACCCAUAAAGUAUACU ------..((((.......-----............(((((((............)))))))....((((((((.((.....))))))))))..........)))). ( -15.60) >DroEre_CAF1 71604 101 - 1 ------CCGUGUUUUCCGUCCGGGCUUCCCACCCCCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGUAUACU ------..((((.....(.(((((.........)))))).....))))..................((((((((..........))))))))............... ( -17.60) >DroYak_CAF1 59336 88 - 1 ------CCGUGUU-------------UCCCACCCCCGGCUUUUCUCACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGCAAACU ------...((((-------------(.........(((((((............)))))))....((((((((..........))))))))......))))).... ( -13.60) >DroPer_CAF1 95440 101 - 1 ACGGAACCUUCCCUUCCCA-----UCCACCGAC-CACAUUCUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGGAAAAGGCCUCAUUCACACCCAAAAAGUAAACC ...(((.....((((.(((-----(.(((.((.-.((.((((............)))).))...)).))).))))..)))).....))).................. ( -13.60) >consensus ______CCGUGUUUUCCGA_____UUGCCCACCCCCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGUAUACU ....................................(((((((............)))))))....((((((((..........))))))))............... (-10.36 = -10.42 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:35 2006