Locus 1109

Sequence ID X_DroMel_CAF1
Location 3,262,590 – 3,262,709
Length 119
Max. P 0.713044
window1790

overview

Window 0

Location 3,262,590 – 3,262,709
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.32
Mean single sequence MFE -26.77
Consensus MFE -22.00
Energy contribution -21.94
Covariance contribution -0.06
Combinations/Pair 1.14
Mean z-score -1.64
Structure conservation index 0.82
SVM decision value 0.38
SVM RNA-class probability 0.713044
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3262590 119 - 22224390
UUUCGAUUUAUUAGAUACAUAUUACUCAUAUAUGAUCUCUUUGUUCGGGCAGCUGAUGAUCAAUCAGAAGUGAUCUCAUC-CAGAGGCUGGGUUCUUUCAGCUUUCAUAUUUGCUCAUUU
....((...(..((((.(((((.......)))))))))..)...))(((((((((((.....)))))..((((.(((...-..)))((((((....))))))..))))..)))))).... ( -28.00)
>DroSim_CAF1 14480 117 - 1
-CUCGAUAUGUCAGAUCCAUAUUACUCACAUAUGAUCUCUUUGUUCGGGCAGCUGAUGAUCAAUCAGAAGUGAUCUCAUU-CAGAGGCUGGGUUCUUUCAGCUUUCAUAU-UGCUCAUUU
-...((......(((((.((((.......)))))))))......))((((((((((.(((((........)))))....)-)))((((((((....)))))))).....)-))))).... ( -28.20)
>DroEre_CAF1 40796 118 - 1
-CUCGGUAUAUUAGAUCUAUAUUACUCAUAUAUGAUCUCUUUGUCUGCGUUGCUGAUGAUCAAUCAGAAGUGAUCUCAUCUCGGAGGCUGGCUUCUUUCAGCUUUCAUAU-UGCUCAUUU
-(.(((.(((..((((((((((.....))))).)))))...)))))).).....(((((.((((..((..((....))..))(((((((((......)))))))))..))-)).))))). ( -26.70)
>DroYak_CAF1 39675 118 - 1
-CUCGAUAUCUUAGAUCUCUAUUACUCAUAUAUGAUCUCUUUGUCCGGGCUGCUGAUGAUCAAUCAGAAGUGAUCUCAUCUCAGAGGCUGGGUUCUUUUAGCUUUCAUAU-UGCUCAUUU
-...((((....(((((................)))))...)))).((((..(((((.....)))))..((((.(((......)))((((((....))))))..))))..-.)))).... ( -24.19)
>consensus
_CUCGAUAUAUUAGAUCCAUAUUACUCAUAUAUGAUCUCUUUGUCCGGGCAGCUGAUGAUCAAUCAGAAGUGAUCUCAUC_CAGAGGCUGGGUUCUUUCAGCUUUCAUAU_UGCUCAUUU
.(((((......((((.(((((.......)))))))))......)))))...(((((.....)))))((((((.(........(((((((((....))))))))).......).)))))) (-22.00 = -21.94 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:40 2006