| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,259,543 – 3,259,647 |
| Length | 104 |
| Max. P | 0.526298 |
| Location | 3,259,543 – 3,259,647 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 89.16 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -21.74 |
| Energy contribution | -24.80 |
| Covariance contribution | 3.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3259543 104 - 22224390 UUGGCGGUGUAUCGCAAAUUGAAAUGCGGUGCACGUGACGUAGUCGCAGACAUGGCUAAAAUGCCAAAAUGCGUGGUCAAAUUGUACGUACAUUGGCCCCAAAC (((((.((((((((((........))))))))))(((((...))))).......)))))...(((((..((((((.........))))))..)))))....... ( -35.60) >DroSim_CAF1 11433 101 - 1 UUGGCGGUGUAUCGCAAAUUGAAAUGCGGCGCACGUGACGUAGUCGCAGACAUGGCUAAAAU--CAAAAUGCGUGGUCAAAUUGUACGUACAUUGGCCCCAA-G ..((((((((((.((((.(((....((.(((((..(((..((((((......))))))...)--))...))))).))))).))))..))))))).)))....-. ( -29.70) >DroEre_CAF1 37716 89 - 1 -------------GCAAAUUGAAAUGCGCUGCACGUGACGUAGUCGCAGACAUGGCUAAAAU--CAAAAUGCGUGGUCAAAUUGUACGUACAUUGGCCCCAGCU -------------(((........)))((((((..(((..((((((......))))))...)--))...)))(.((((((..(((....))))))))).)))). ( -22.00) >DroYak_CAF1 36453 102 - 1 UUGGCGGUGUAUCGCAAAUUGAAAUGCGGUGCACGUGACGUAGUCGCAGACAUGGCUAAAAU--CAAAAUGCGUGGUCAAAUUGUACGUACGUUGGCCCCAACU ..(((.((((((((((........))))))))))..((((((((.((((...((((((..((--....))...))))))..)))))).)))))).)))...... ( -32.00) >consensus UUGGCGGUGUAUCGCAAAUUGAAAUGCGGUGCACGUGACGUAGUCGCAGACAUGGCUAAAAU__CAAAAUGCGUGGUCAAAUUGUACGUACAUUGGCCCCAACU (((((.((((((((((........))))))))))(((((...))))).......)))))..........((.(.((((((..(((....))))))))))))... (-21.74 = -24.80 + 3.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:39 2006