Locus 1107

Sequence ID X_DroMel_CAF1
Location 3,257,098 – 3,257,214
Length 116
Max. P 0.522646
window1788

overview

Window 8

Location 3,257,098 – 3,257,214
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.45
Mean single sequence MFE -38.05
Consensus MFE -26.55
Energy contribution -26.30
Covariance contribution -0.25
Combinations/Pair 1.10
Mean z-score -1.47
Structure conservation index 0.70
SVM decision value -0.02
SVM RNA-class probability 0.522646
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3257098 116 + 22224390
----UUUGCUGUUGCGUCUGAUAAAUCCAACCUGUUGGCUUCUGGCCAAGAGCAAAGUUUUUGGCGGCGCACAAUUAGCCACACAGUGGUGUCAUAUAUGCAGUGGGCCAAUCUGGCAAU
----....(..((((((.(((((...(((..(((((((((....(((((((((...)))))))))(.....)....))))).))))))))))))...))))))..)(((.....)))... ( -38.40)
>DroSim_CAF1 8293 112 + 1
----UCUGCUGUUGCGGCUGAUAAAU-CAACCUGUUGGCUUCUGGCCAAGAGCAAAGUU-UUGGCGGCGGGCAAUUAGCCA--CAGUGGUGUCAUGUAUGCAGUGGGCCAAUCUGGCAAU
----.(..((((((((((((((....-(((....)))(((..(.(((((((......))-))))).)..))).))))))).--..(((....)))))).))))..)(((.....)))... ( -38.40)
>DroEre_CAF1 35277 113 + 1
AUCAGUGGCUGUUGUGGCUGAUAAAU-CAACCGGUUGGCUUCUGGCCAAGAGCUAAGUU-UUGGCGGCGGGCAAUUAGCCA--GA---GUGUCAUGUAUGCAGUGGGCUAACCUGGCAAU
((((((.((....)).))))))....-...(((((((((((((((((((((......))-)))))(((((((.....))).--..---.)))).......))).))))))))).)).... ( -40.80)
>DroYak_CAF1 33919 113 + 1
AUCAUUUGCUGUUGUGGCUGAUAAAU-CAACCUGUUGGCUUCUGGCCAAGAGCAAAGUU-UCGGCGGCGGUCAAUUAGCCA--GA---GUGUCAUGUAUGCAGUGGGCUAACCUGGCAAU
......((((((((..(((((....)-)...((.(((((.....))))).))...))).-.))))))))((((.((((((.--.(---.(((.......))).).))))))..))))... ( -34.60)
>consensus
____UUUGCUGUUGCGGCUGAUAAAU_CAACCUGUUGGCUUCUGGCCAAGAGCAAAGUU_UUGGCGGCGGGCAAUUAGCCA__CA___GUGUCAUGUAUGCAGUGGGCCAACCUGGCAAU
..........(((((((.((.......)).)).((((((((((((((((.(((...))).)))))(((.........)))....................))).))))))))...))))) (-26.55 = -26.30 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:38 2006