Locus 1106

Sequence ID X_DroMel_CAF1
Location 3,253,941 – 3,254,061
Length 120
Max. P 0.757454
window1787

overview

Window 7

Location 3,253,941 – 3,254,061
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.08
Mean single sequence MFE -36.60
Consensus MFE -31.23
Energy contribution -31.47
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -1.74
Structure conservation index 0.85
SVM decision value 0.49
SVM RNA-class probability 0.757454
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3253941 120 + 22224390
ACUCAAAAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUCCAAUGAUCCCAACUACCUGAGCUCGUUCGCUAUUGUUAAUUGGGCAUGGGAUCGGAUUGAAACGGUGAUCUGGGAUGUG
..............((((((((((((((..((........))..((((((((.(.....).(((((((.((....)).)).))))).)))))))).........)))))..))))))))) ( -35.10)
>DroSim_CAF1 5297 116 + 1
ACUGA-AAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUCC---GAUCCGAACUACCUGAGCUCGAUCGCUAUUGUUAAUUGGGCAUGGGAUCGGAUUGAAUCGGUGAUCUGGGCUGUG
.....-........((((.(((((((((..(..(((..((((---(((((...(.....).(((((((.((....))..)))))))...))))))))))))..))))))..)))).)))) ( -34.00)
>DroEre_CAF1 30501 116 + 1
ACAGA-AAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUAC---GAUCCGAACUACCUGAGCUUGAUCGCUAUUGUUAAUUGGGCAUGGGAUCGGCUUGAGUCGGUGAUCUGGGAUGUG
.....-........((((((((((((((..(((((((....(---(((((...(.....).(((..((.((....))..))..)))...))))))..))))))))))))..))))))))) ( -37.60)
>DroYak_CAF1 30251 116 + 1
ACAGA-AAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUCC---GAUCCGAACUACCUGAGCUUGAUCGCUAUUGUUAAUUGGGCAUGGGAUCGGCUUGAGUUGGUGAUCUGGGAUGUG
.....-........(((((((((((((((..((((((...((---(((((...(.....).(((..((.((....))..))..)))...))))))).))))))))))))..))))))))) ( -39.70)
>consensus
ACAGA_AAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUCC___GAUCCGAACUACCUGAGCUCGAUCGCUAUUGUUAAUUGGGCAUGGGAUCGGAUUGAAUCGGUGAUCUGGGAUGUG
..............((((((((((((((..(((((((....................)))))))(((((.((((.(((.....)))))))))))).........)))))..))))))))) (-31.23 = -31.47 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:37 2006