Locus 1105

Sequence ID X_DroMel_CAF1
Location 3,252,770 – 3,252,877
Length 107
Max. P 0.967073
window1786

overview

Window 6

Location 3,252,770 – 3,252,877
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 97.37
Mean single sequence MFE -22.32
Consensus MFE -19.42
Energy contribution -19.82
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.87
SVM decision value 1.60
SVM RNA-class probability 0.967073
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3252770 107 + 22224390
AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAUAUACGCGCUACAACGGUAUUUUUAGCGAAAGCAAAA
.......................((((((((((..((.........((((....)))).....((((........))))..)))))))..)))))((....)).... ( -21.70)
>DroSec_CAF1 22199 106 + 1
AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAUAUA-GCGCUAGAACGGUAUUUUUAGCGAAAGCGAAA
.......................((((((((((((...........((((....)))).....((((((...))-)))).)).)))))..)))))((....)).... ( -23.40)
>DroSim_CAF1 4107 106 + 1
AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGAAUGCCCGUCACACGCGCUGAUAUA-GCGCUAGAACGGUAUUUUUAGCGAAAGCGAAA
.......................((((((((((((...........(((......))).....((((((...))-)))).)).)))))..)))))((....)).... ( -20.30)
>DroEre_CAF1 29269 106 + 1
AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAAAUA-GCGCUAGAUCGGUAUUUUUAGCGAAAGCGAAA
.......................((((((((((((...........((((....)))).....((((((...))-)))).))).))))..)))))((....)).... ( -23.40)
>DroYak_CAF1 29062 106 + 1
AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAAAUA-GCGCUACAACGGUAUUUUUAGCGAAAGCGAAA
.......................((((((((((..((.........((((....)))).....((((((...))-))))..)))))))..)))))((....)).... ( -22.80)
>consensus
AAAACAUACGUAUAAAAAAUAAAUAGAAGCCGUCUUGAAUAAACACACGGAUGCCCGUCACACGCGCUGAUAUA_GCGCUAGAACGGUAUUUUUAGCGAAAGCGAAA
.......................((((((((((.............((((....)))).....((((........))))....)))))..)))))((....)).... (-19.42 = -19.82 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:36 2006