| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,250,998 – 3,251,108 |
| Length | 110 |
| Max. P | 0.650155 |
| Location | 3,250,998 – 3,251,108 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.98 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -28.38 |
| Energy contribution | -28.82 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3250998 110 + 22224390 AUCCU---GGUCAAUUGAAU-GGUCCGAUUCGAAUGAUUCUUGGCAGCAGCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAAGUGGAC------ .(((.---(((((.((((((-......)))))).)))((((((((....((((.....))))......)))))))).......))(((((....)))))...........))).------ ( -27.70) >DroSec_CAF1 20556 107 + 1 CUCCU---GGUCAAUUGAAU-GGUCCGAUUCGAACGCUUCUUGCCA---GCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAUGUGGAC------ .(((.---(..((......)-)..)((((..(((((((((((((((---((((.....))))....))).)))).))))))))...))))......(((((....)))))))).------ ( -29.80) >DroSim_CAF1 2107 107 + 1 CUCCU---GGUCAAUUGAAU-GGUCCGAUUCGAACGCUUCUUGGCA---GCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAUGUGGAC------ .(((.---(..((......)-)..)((((..((((((((((((((.---((((.....))))......)))))).))))))))...))))......(((((....)))))))).------ ( -32.00) >DroEre_CAF1 27501 108 + 1 CUCCU---GGUCAAUUGACUAGGUCCGAUUCGAACGCUUCUUGGCA---GCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAAGUGGAC------ ..(((---((((....)))))))((((((..((((((((((((((.---((((.....))))......)))))).))))))))...)))((.....))............))).------ ( -39.10) >DroYak_CAF1 27294 116 + 1 CUCCUGCUGGCCAAUUGAAU-GGUCCGAUUCGAACGCUUCUUGGCA---GCAUGACAAGUGCAAUUUGGCCAAGAAACCGUUUCCUGUCGCAUGUUGCAUUAAUAAAAGUGGACGUAAAG .....((.(((((......)-)))).(((..(((((.((((((((.---((((.....))))......))))))))..)))))...)))))(((((.((((......))))))))).... ( -31.00) >consensus CUCCU___GGUCAAUUGAAU_GGUCCGAUUCGAACGCUUCUUGGCA___GCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAAGUGGAC______ ......................(((((((..((((((((((((((....((((.....))))......)))))).))))))))...)))((.....))............))))...... (-28.38 = -28.82 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:35 2006