| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,248,382 – 3,248,484 |
| Length | 102 |
| Max. P | 0.644994 |
| Location | 3,248,382 – 3,248,484 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.73 |
| Mean single sequence MFE | -32.25 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.45 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3248382 102 + 22224390 GAGGUCGGGGUUGCAACAGGUGCAAUUCG----UCGAUCGUUGAAGUUAACAGUGUUGAAAUGAAGGCGAAUUAACAUU-GUACCCUUCCACGAAUGCGGGCCUUUA-- ((((((.((((((((.....)))))))).----.((.((((.((((...((((((((((..((....))..))))))))-))...)))).))))...))))))))..-- ( -33.90) >DroEre_CAF1 24889 101 + 1 GGGUUCGGGGUUGCAACAGGUGCAACUCG----GCGAUCGAUGAAGUUAACAGUGUUGAAAUGAAGGCGAAUUAACAUU-GUACCCUUUCUCGAAUGCGGGCUCU-A-- ((((((.((((((((.....)))))))).----(((.((((.((((...((((((((((..((....))..))))))))-))...)))).)))).))))))))).-.-- ( -37.40) >DroYak_CAF1 24516 101 + 1 GAGGUAGGGGUUGCAACAGGUGCAACUCG----CCGAUCGAUGAAGUUAACAGUGUUGAAAUGAAGGCGAAUUAACAUU-GUACCCUUCCCUGAAUGCGGGCUAU-A-- ...((((((((((((.....)))))))).----(((.(((..((((...((((((((((..((....))..))))))))-))...))))..)))...))).))))-.-- ( -30.60) >DroAna_CAF1 31726 106 + 1 CAGGCA--ACUUGCAACAGGUGCAAGUUGAGGUCCAAUCGAUGAAGUUAACAGUGUUGAAAUGAAGGCACAUUAUCAUGAAUGCCCUGGCUCAUAAAAAGGGUAU-AUU ..((((--(((((((.....)))))))))....))....(((((.(....).(((((........))))).)))))....(((((((...........)))))))-... ( -27.10) >consensus GAGGUAGGGGUUGCAACAGGUGCAACUCG____CCGAUCGAUGAAGUUAACAGUGUUGAAAUGAAGGCGAAUUAACAUU_GUACCCUUCCUCGAAUGCGGGCUAU_A__ ..((...((((((((.....)))))))).....))..((((.((((...((((((((((..((....))..)))))))).))...)))).))))............... (-17.14 = -17.45 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:33 2006