| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,243,440 – 3,243,537 |
| Length | 97 |
| Max. P | 0.942521 |
| Location | 3,243,440 – 3,243,537 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 78.57 |
| Mean single sequence MFE | -10.79 |
| Consensus MFE | -8.53 |
| Energy contribution | -8.75 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3243440 97 - 22224390 UAGCUAGCUAGCUAUAUAACCUCCCCCGAUCUCAUUCAAAUUCUGGUCAUCAUAUA--UAUUUAUCGAAUAUCCAUAUAUAUCAUGGGUUUUUUUUUAU (((((....)))))..........(((((((.............))))...(((((--(((.............))))))))...)))........... ( -12.54) >DroSec_CAF1 11963 84 - 1 UAC--------CUAUAUAACCUCCCCCGAUCUCAUUCAAAUUCUGGUCAUCAUAUAUAUAUUAAUCGAAUAUCCAUAUUUAUCAUGGGUAUU------- (((--------((((((((........((((.............))))...((((..(((((.....)))))..)))))))).)))))))..------- ( -10.32) >DroYak_CAF1 19653 76 - 1 --------------UAUAACCUCCUCCGAUCUCAUUUUAAUUCUGGUCAUCAUAUA--UAUUAAUCGAAUAUCCAUAUAUAUCAUGGGUGUU------- --------------.............((((.............))))........--.........(((((((((.......)))))))))------- ( -9.52) >consensus UA_________CUAUAUAACCUCCCCCGAUCUCAUUCAAAUUCUGGUCAUCAUAUA__UAUUAAUCGAAUAUCCAUAUAUAUCAUGGGUAUU_______ ...........................((((.............))))...................(((((((((.......)))))))))....... ( -8.53 = -8.75 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:32 2006