Locus 1097

Sequence ID X_DroMel_CAF1
Location 3,223,348 – 3,223,455
Length 107
Max. P 0.595188
window1777

overview

Window 7

Location 3,223,348 – 3,223,455
Length 107
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 91.59
Mean single sequence MFE -23.84
Consensus MFE -22.43
Energy contribution -22.43
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.94
SVM decision value 0.12
SVM RNA-class probability 0.595188
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3223348 107 - 22224390
CC--CAUACUCCUAUACCGAUACUUAGAUACUUAGAUACUUCUCCACUUCAGACCCCCGACGUCU----CGUCAAUGUUGCACUUGAGGUUAUCGUCGGGGAAAAUCGUUAAA
..--.............((((.....((.....(((....))).....))....((((((((...----(.((((........)))).)....))))))))...))))..... ( -24.30)
>DroSec_CAF1 32245 109 - 1
CCUCUAUACUCCUAUACCGAUACUUAGAUACUUAGAUACUUCUCCACUUCAGACCCCCGACGUCU----CGUCAAUGUUGCACUUGAGGUUAUCGUCGGGGAAAAUCGUUAAA
.................((((.....((.....(((....))).....))....((((((((...----(.((((........)))).)....))))))))...))))..... ( -24.30)
>DroYak_CAF1 37586 105 - 1
CC--UAUAC------ACCGAUACUCAGAUACUUAGAUACUUCUCCACUUCAGACCCCCGACGUCUCGCUCGUCAAUGUUGCACUUGAGGUUAUCGUCGGGGAAAAUCGUUAAA
..--.....------..((((.....((.....(((....))).....))....((((((((...(.((((.............)))))....))))))))...))))..... ( -22.92)
>consensus
CC__UAUACUCCUAUACCGAUACUUAGAUACUUAGAUACUUCUCCACUUCAGACCCCCGACGUCU____CGUCAAUGUUGCACUUGAGGUUAUCGUCGGGGAAAAUCGUUAAA
.................((((.....((.....(((....))).....))....((((((((.......(.((((........)))).)....))))))))...))))..... (-22.43 = -22.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:27 2006