Locus 1096

Sequence ID	X_DroMel_CAF1
Location	3,223,037 – 3,223,153
Length	116
Max. P	0.651329

overview

Window 6

Location	3,223,037 – 3,223,153
Length	116
Sequences	4
Columns	116
Reading direction	reverse
Mean pairwise identity	81.07
Mean single sequence MFE	-23.40
Consensus MFE	-13.27
Energy contribution	-13.90
Covariance contribution	0.63
Combinations/Pair	1.07
Mean z-score	-2.11
Structure conservation index	0.57
SVM decision value	0.25
SVM RNA-class probability	0.651329
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3223037 116 - 22224390
CCGUUCUGCCGUCUCUUUCUGAUCGCCAAGAGCAUGACCUUUAGCGCUGGCGACCAACAAAAAUACAUACAUGCAUAUGUAUAUCAGCAAACUUCCCAAGACAGCACUAAACAAAU
..(((.(((.((((.....((.((((((.(.((..........)).))))))).))......(((((((......)))))))................)))).)))...))).... ( -24.20)
>DroSec_CAF1 31949 102 - 1
CUGUGCUGCCGUCUCUUUCUGAUCGCCAAGAGCGUGACCUUUCGCGCUGGCGACCAACAAAAAUA--------------UAUAUCAGCAAACUUCCCAAGACAGCACUAAACCAAU
..((((((.(.....(((((((((((((...((((((....))))))))))))............--------------....)))).)))........).))))))......... ( -26.01)
>DroEre_CAF1 33861 102 - 1
--------CCCUAUCUUUAUGCUCGCCAAGAGCGUGACCUUUUGCGCUGGCGACCAACAAAAAUAU------ACAUAUGUAUAUCAGCAAACUUCCCAAGACUGCACUAAACCAAU
--------...........((.((((((...(((..(....)..))))))))).))......((((------((....))))))..(((..((.....))..)))........... ( -21.10)
>DroYak_CAF1 37298 102 - 1
CCGUACAGCCCUCUCUUUUUGCCCGCCAAGAGCGUGACCUUUUGCGCUGGCGACCAACAAAAAUAU--------------AUAUCAGCAAAAUGCCCAAGACGGCACUAAACCAAU
.......(((.(((....(((((.((((((((......)))))).)).))))).............--------------......((.....))...))).)))........... ( -22.30)
>consensus
CCGU_CUGCCCUCUCUUUCUGAUCGCCAAGAGCGUGACCUUUUGCGCUGGCGACCAACAAAAAUAU_____________UAUAUCAGCAAACUUCCCAAGACAGCACUAAACCAAU
...................((.((((((...((((((....)))))))))))).))............................................................ (-13.27 = -13.90 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:26 2006