| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,221,189 – 3,221,285 |
| Length | 96 |
| Max. P | 0.858923 |
| Location | 3,221,189 – 3,221,285 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 86.21 |
| Mean single sequence MFE | -18.97 |
| Consensus MFE | -18.59 |
| Energy contribution | -18.02 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3221189 96 - 22224390 ------------GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAAUUAAGUUUCUACAUAAUGAACAAAAUG- ------------((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))..................- ( -19.40) >DroSec_CAF1 30256 97 - 1 ------------GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAAAUGA ------------((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))................... ( -20.70) >DroEre_CAF1 32146 104 - 1 -----GAAGAAGGGGGUUAACCACUCAAUACGAGGCGAAAGAUUAAUGGUCAAAUCGAACCGAAAACCCCGAAUAUCGAAACAAAGUCUCUACAUAAUGAACAAAAUGU -----.......((((((.(((((((.....))).(....).....))))....(((...))).))))))....................................... ( -16.60) >DroYak_CAF1 35566 105 - 1 GAGGGGAAAGAGGGGGUUGACCACUUAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAA---- ..((((.....((.((((..((((((.....))).(....).....)))...))))...)).....)))).......(((((...)))))...............---- ( -19.20) >consensus ____________GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAAAUG_ ............((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))................... (-18.59 = -18.02 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:25 2006