Locus 1086

Sequence ID X_DroMel_CAF1
Location 3,204,690 – 3,204,810
Length 120
Max. P 0.561351
window1759

overview

Window 9

Location 3,204,690 – 3,204,810
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.57
Mean single sequence MFE -22.15
Consensus MFE -15.84
Energy contribution -15.28
Covariance contribution -0.56
Combinations/Pair 1.22
Mean z-score -1.51
Structure conservation index 0.72
SVM decision value 0.06
SVM RNA-class probability 0.561351
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3204690 120 + 22224390
UUUAAGCCUAAUACUUAGGGUGUUUUCCCCUGCUCGACCAAAAGGUGUUGAAACGUUUCUUUGCCACUCGGCACCUUUACCUUUCCAUAAUCCCGAUUACUUACGCUUACUUUUUUUUGU
..(((((.(((....(((((.(....))))))........(((((((((((...((......))...)))))))))))......................))).)))))........... ( -23.90)
>DroSec_CAF1 14074 110 + 1
UUUAAGCCUGAUACUUAGGGUGUUUUCCCCUGUUGGACCAAGAGGUGUUGA-ACGUUUCUUUGGCACUCGGCGCCUUUACCUUUCCAUAAUCCCGAUUACUUACACUU----UU-----U
..((((.........(((((.(....)))))).((((...(((((((((((-..(((.....)))..))))))))))).....))))............)))).....----..-----. ( -23.60)
>DroEre_CAF1 15751 107 + 1
UUUAAGCCUGAUACUUAGGGUUUUCUCCCCUGUUCGACCAGGAGGUGUUGA-ACAUUUCUUUGCCACUCGGCACCUUUACCUUUCCAUAAUCCCAAAUACUUAUAUUU------------
..((((((((.....(((((.......)))))......))))(((((((((-.((......))....))))))))).......................)))).....------------ ( -21.70)
>DroYak_CAF1 18321 107 + 1
UUUAAGCCAGAUACUUAGGGUGUUUUCGCCUCUUCGAACAAGAAGUGUUGA-ACAUUUCUUUGCCACUCGGCACCUUUACCUUUCCAUAAUCCCGAUUACUUCCACUU------------
.................(((.((..(((...........((((((((....-.))))))))((((....))))....................)))..)).)))....------------ ( -19.40)
>consensus
UUUAAGCCUGAUACUUAGGGUGUUUUCCCCUGUUCGACCAAGAGGUGUUGA_ACAUUUCUUUGCCACUCGGCACCUUUACCUUUCCAUAAUCCCGAUUACUUACACUU____________
.................(((.....((........))...(((((((((((..((......))....))))))))))).............))).......................... (-15.84 = -15.28 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:11 2006