Locus 1084

Sequence ID X_DroMel_CAF1
Location 3,194,993 – 3,195,104
Length 111
Max. P 0.988758
window1756 window1757

overview

Window 6

Location 3,194,993 – 3,195,104
Length 111
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -28.75
Consensus MFE -16.53
Energy contribution -17.75
Covariance contribution 1.23
Combinations/Pair 1.11
Mean z-score -3.48
Structure conservation index 0.57
SVM decision value 2.06
SVM RNA-class probability 0.986913
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3194993 111 + 22224390
AAAUCAGUUACUGACACGAUUAUAUACGCCUAAAUUUACGCUUUCAUAAUCGAUGUCAGUUCUGAAUUCAAGUACCAAAUGAAAGUCAACACUCGCAAAUAAUUUUGAUUG
...((((..((((((((((((((..(.((.((....)).)).)..))))))).))))))).))))..(((((.......((..(((....)))..))......)))))... ( -24.12)
>DroSec_CAF1 4592 104 + 1
AAAUCAGUUACUGACAUGGUUAUAUAGGC----AUUUGUGCUUUCAAAAUCCAUGUCAGUUCUGAAUUCAAGUACCAAAUGAGAGUC-ACACUCGCA-AUAACUUUGAU-G
...((((..((((((((((......((((----(....))))).......)))))))))).))))..(((((.......((.(((..-...))).))-.....))))).-. ( -29.62)
>DroYak_CAF1 6518 104 + 1
AACUCAGUUACUGACACGGUAG--GGGGCAUAGAUUU-UCCUUUCA-AAUCCGUGUCAGUUCUGAGUUCAAGUACCAAAUGAAACUC-AAACUCGUA-AUAACUGUGUU-G
(((.(((((((((((((((.((--((((........)-)))))...-...)))))))))....(((((..(((..(....)..))).-.)))))...-.)))))).)))-. ( -32.50)
>consensus
AAAUCAGUUACUGACACGGUUAUAUAGGC_UA_AUUU_UGCUUUCA_AAUCCAUGUCAGUUCUGAAUUCAAGUACCAAAUGAAAGUC_ACACUCGCA_AUAACUUUGAU_G
...((((..((((((((((......((((..........)))).......)))))))))).)))).............................................. (-16.53 = -17.75 +   1.23)

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 3,194,993 – 3,195,104
Length 111
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -29.97
Consensus MFE -18.14
Energy contribution -18.15
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -3.17
Structure conservation index 0.61
SVM decision value 2.13
SVM RNA-class probability 0.988758
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3194993 111 - 22224390
CAAUCAAAAUUAUUUGCGAGUGUUGACUUUCAUUUGGUACUUGAAUUCAGAACUGACAUCGAUUAUGAAAGCGUAAAUUUAGGCGUAUAUAAUCGUGUCAGUAACUGAUUU
...((((.((((..((.((((....)))).))..))))..))))..((((.(((((((.((((((((...((.((....)).))...)))))))))))))))..))))... ( -30.50)
>DroSec_CAF1 4592 104 - 1
C-AUCAAAGUUAU-UGCGAGUGU-GACUCUCAUUUGGUACUUGAAUUCAGAACUGACAUGGAUUUUGAAAGCACAAAU----GCCUAUAUAACCAUGUCAGUAACUGAUUU
.-.((((.((...-((.(((...-..))).))......))))))..((((.((((((((((.((......(((....)----))......))))))))))))..))))... ( -25.40)
>DroYak_CAF1 6518 104 - 1
C-AACACAGUUAU-UACGAGUUU-GAGUUUCAUUUGGUACUUGAACUCAGAACUGACACGGAUU-UGAAAGGA-AAAUCUAUGCCCC--CUACCGUGUCAGUAACUGAGUU
.-(((.(((((..-...(((((.-.(((.((....)).)))..)))))...((((((((((...-....(((.-............)--)).))))))))))))))).))) ( -34.02)
>consensus
C_AUCAAAGUUAU_UGCGAGUGU_GACUUUCAUUUGGUACUUGAAUUCAGAACUGACAUGGAUU_UGAAAGCA_AAAU_UA_GCCUAUAUAACCGUGUCAGUAACUGAUUU
................((((((........))))))..........((((.((((((((((...............................))))))))))..))))... (-18.14 = -18.15 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:09 2006