| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,193,814 – 3,193,915 |
| Length | 101 |
| Max. P | 0.618081 |
| Location | 3,193,814 – 3,193,915 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.52 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -16.52 |
| Energy contribution | -16.52 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3193814 101 - 22224390 UCCUCCAGAGUAGACAUAAAGUUAAGAAAAGUUUUCGGUGGUAUCAUAAGACUGGUCAGUAAUUCUCUACUCUGUGGGG-CG-GA------ACGAAAAAAC---GAA--AAAGA-- .(((((((((((((.....(((((.((..((((((..(((....)))))))))..))..))))).))))))))).))))-..-..------..........---...--.....-- ( -24.30) >DroVir_CAF1 5442 115 - 1 UCCUCCAGAGUAGUCAUAAAGUUAAGAAAAGUUUUCGGUGGUAUCAUAAGACUGGUCAGUAAUUCUCUACUCUGUAAGCAUAUGAAG-AUAAUAAAAGAAAGCACACAAUUAGCUU .....((((((((......(((((.((..((((((..(((....)))))))))..))..)))))..)))))))).............-...........((((.........)))) ( -18.30) >DroEre_CAF1 3583 101 - 1 UCCUCCAGAGUAGACAUAAAGUUAAGAAAAGUUUUCGGUGGUAUCAUAAGACUGGUCAGUAAUUCUCUACUCUGUGGGG-CG-AAAC------AAAAGCAA---UAA--GGAGA-- .((..(((((((((.....(((((.((..((((((..(((....)))))))))..))..))))).)))))))))..))(-(.-....------....))..---...--.....-- ( -24.60) >DroWil_CAF1 3912 97 - 1 UCCUCCAGAGUAGUCAUAAAGUUAAGAAAAGUUUUCGGUGGUAUCAUAAGACUGGUCAAUAAUUCUCUACUCUGUAAGU-UG-ACAAGA--ACAAA-------------AAAGA-- .....((((((((......(((((.((..((((((..(((....)))))))))..))..)))))..))))))))...((-(.-.....)--))...-------------.....-- ( -16.50) >DroYak_CAF1 5291 105 - 1 UCCUCCAGAGUAGACAUAAAGUUAAGAAAAGUUUUCGGUGGUAUCAUAAGACUGGUCAGUAAUUCUCUACUCUGUGGGG-UG-AAAA----GUAAAAAACA---GAA--GGAGAAG .(((((((((((((.....(((((.((..((((((..(((....)))))))))..))..))))).))))))))).))))-..-....----..........---...--....... ( -24.50) >DroAna_CAF1 5512 87 - 1 UCCUCCAGAGUAGUCAUAAAGUUAAGAAAAGUUUUCGGUGGUAUCAUAAGACUGGUCAGUAAUUCUCUACUCUGUAAUU-UC-AAA-------------------------AGA-- .....((((((((......(((((.((..((((((..(((....)))))))))..))..)))))..)))))))).....-..-...-------------------------...-- ( -17.00) >consensus UCCUCCAGAGUAGACAUAAAGUUAAGAAAAGUUUUCGGUGGUAUCAUAAGACUGGUCAGUAAUUCUCUACUCUGUAAGG_UG_AAA_____A_AAAA_AAA____AA__AAAGA__ .....((((((((......(((((.((..((((((..(((....)))))))))..))..)))))..)))))))).......................................... (-16.52 = -16.52 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:06 2006