Locus 1081

Sequence ID X_DroMel_CAF1
Location 3,193,170 – 3,193,262
Length 92
Max. P 0.987068
window1752

overview

Window 2

Location 3,193,170 – 3,193,262
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 82.31
Mean single sequence MFE -26.83
Consensus MFE -18.96
Energy contribution -18.30
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -3.11
Structure conservation index 0.71
SVM decision value 2.07
SVM RNA-class probability 0.987068
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3193170 92 - 22224390
AUGUAUAUCUACAUCUGCAUAUUUCUAUAACCAAAGUGGGGCAGGCGAAUGUCGGCCAAGGGAUGUGAAAGAUGUGAAAGAUGUGGAUGUGG
...(((((((((((((.(((((..((....((.....))(((.(((....))).))).))..)))))...........))))))))))))). ( -32.10)
>DroSec_CAF1 2747 76 - 1
GCGUAUAUCUACAUCUGCAUAUUUCUAUAACCGAA-UGGGGCAGGCAAAUGUGGGCCAAGGGAUGUGGAAGAU---------------GCGG
.(((((.(((((((((........((((......)-)))(((..((....))..)))...)))))))))..))---------------))). ( -24.20)
>DroSim_CAF1 3065 76 - 1
GCGUAUAUCUACAUCUGCAUAUUUCUAUAACCGAA-UGGGGCAGGCAAAUGUGGGCCAAGGGAUGUGGAAGAU---------------GCGG
.(((((.(((((((((........((((......)-)))(((..((....))..)))...)))))))))..))---------------))). ( -24.20)
>consensus
GCGUAUAUCUACAUCUGCAUAUUUCUAUAACCGAA_UGGGGCAGGCAAAUGUGGGCCAAGGGAUGUGGAAGAU_______________GCGG
(((((....)))((((.(((((..((....((.....))(((..((....))..))).))..)))))..))))...............)).. (-18.96 = -18.30 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:05 2006