Locus 1080

Sequence ID X_DroMel_CAF1
Location 3,191,451 – 3,191,549
Length 98
Max. P 0.809796
window1751

overview

Window 1

Location 3,191,451 – 3,191,549
Length 98
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.15
Mean single sequence MFE -20.40
Consensus MFE -13.50
Energy contribution -15.00
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.66
SVM decision value 0.64
SVM RNA-class probability 0.809796
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3191451 98 + 22224390
----ACACAAA--UUUUC--UCGAAUCGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGCGAGC--CAAU
----.......--....(--((....(....).(((........((((((......))))))((((((.((((((....))))))))))))....)))))).--.... ( -20.70)
>DroVir_CAF1 1184 92 + 1
---------AA---UCCG--ACGAAUGUAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUAAGAGC--CCAA
---------..---....--...........(.((.........((((((......))))))((((((.((((((....)))))))))))).........))--.).. ( -17.10)
>DroPse_CAF1 1704 89 + 1
-----------------GCGUUGGAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGCGAAC--CAAG
-----------------...((((........((((.(((...))).))))..((((..((((....((((((((....)))))))).))))..))))...)--))). ( -20.70)
>DroGri_CAF1 1110 100 + 1
--A-AGCCAAA---GCCG--UCGAAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUACGAACACCCAA
--.-.......---....--(((.....................((((((......))))))((((((.((((((....))))))))))))......)))........ ( -17.30)
>DroWil_CAF1 1490 99 + 1
CCGAGCG---C--CGUUC--GAGAAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGGAAGC--CAAC
(((.(((---(--..(((--((...))))).)))).........((((((......))))))((((((.((((((....))))))))))))....)))....--.... ( -22.80)
>DroAna_CAF1 1765 101 + 1
-----UCACUUUUUUUUCCGACGAAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGCGAAC--CAAG
-----((((((((..(((....)))..))))))(((........((((((......))))))((((((.((((((....))))))))))))....)))))..--.... ( -23.80)
>consensus
_________AA___UUUC__UCGAAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGCGAAC__CAAA
............................................((((((......))))))((((((.((((((....))))))))))))................. (-13.50 = -15.00 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:04 2006