Locus 108

Sequence ID X_DroMel_CAF1
Location 450,918 – 451,010
Length 92
Max. P 0.803542
window142

overview

Window 2

Location 450,918 – 451,010
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 80.97
Mean single sequence MFE -38.25
Consensus MFE -22.84
Energy contribution -23.62
Covariance contribution 0.78
Combinations/Pair 1.25
Mean z-score -2.29
Structure conservation index 0.60
SVM decision value 0.62
SVM RNA-class probability 0.803542
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 450918 92 + 22224390
CGCCCAUGCCAAUGCAGCCGCCGCCCAUCUGCUGGCCAGCCACAAUGCAGCGGCUGCGGCUGCUGUGGCCGCCG-GCCAAUAUCUGCCCAACC
.(((...((((..((((((((.(((...(((((((....)))....)))).))).))))))))..))))....)-))................ ( -41.50)
>DroPse_CAF1 73800 84 + 1
CGCCCAUGCCCACG---CCGCCGCCCACCUGCUGGCCAGUCACAAUGCGGCGGCCGCCGCCGCAGUUGCUGCCG-GGCAGUAUCUUCC-----
......(((((...---..(((((......)).)))((((.((..((((((((...)))))))))).))))..)-)))).........----- ( -34.50)
>DroSec_CAF1 53134 93 + 1
CGCCCACGCCAACGCAGCCGCCGCCCAUCUGCUGGCCAGCCACAAUGCAGCGGCUGCGGCUGCUGUGGCCGCCCGCCCAAUACCUGCCCAACC
.((....((((..((((((((.(((...(((((((....)))....)))).))).))))))))..)))).....))................. ( -38.00)
>DroEre_CAF1 63481 92 + 1
CGCCCACGCCAACGCAGCCGCCGCCCACCUGCUGGCCAGCCACAAUGCAGCGGCUGCGGCUGCCGUGGCCGCCG-GCCAAUACCUGCCCAACC
.(((..(((((..((((((((.(((...(((((((....)))....)))).))).))))))))..))).))..)-))................ ( -41.30)
>DroAna_CAF1 73761 89 + 1
CGCCCAU---CAUGCCGCUGCCGCCCAACUCCUGGCCAGCCACAAUGCAGCCGCUGCAGCGGCAGUGGCCGCCG-GGCAGUAUCUUCCGAAUC
.((((..---...(((((((((((........(((....)))...(((((...))))))))))))))))....)-)))............... ( -39.70)
>DroPer_CAF1 77593 84 + 1
CGCCCAUGCCCACG---CCGCCGCCCACCUGCUGGCCAGUCACAAUGCGGCGGCCGCCGCCGCAGUUGCUGCCG-GGCAGUAUCUUCC-----
......(((((...---..(((((......)).)))((((.((..((((((((...)))))))))).))))..)-)))).........----- ( -34.50)
>consensus
CGCCCAUGCCAACGCAGCCGCCGCCCACCUGCUGGCCAGCCACAAUGCAGCGGCUGCGGCUGCAGUGGCCGCCG_GCCAAUAUCUGCCCAACC
((.((((......((((((((.(((...(((((((....)))....)))).))).)))))))).)))).))...................... (-22.84 = -23.62 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:30 2006