| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,176,137 – 3,176,239 |
| Length | 102 |
| Max. P | 0.998880 |
| Location | 3,176,137 – 3,176,239 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 61.44 |
| Mean single sequence MFE | -30.66 |
| Consensus MFE | -15.09 |
| Energy contribution | -16.10 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.49 |
| SVM decision value | 3.26 |
| SVM RNA-class probability | 0.998880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3176137 102 - 22224390 CUGGAAGGUU-GAAGGUGCUGGGAAA-GUGC---UGGGAAAAUGCUGGAAAAAGGGGGGGGGGGGGGGUGGCGGCGUUGAGCAACAAUGUCGCCAGAUUCCCUCGCA (..(......-...((..((.....)-)..)---).........)..).........(.(((((((..(((((((((((.....)))))))))))..))))))).). ( -39.87) >DroPse_CAF1 173594 87 - 1 ------AGGGGGACGGG----GGGCAUGGGGCAU--GGGGCA---UGGGGCAUGGGGC-----AUGGAAGGUGGGGUUGAUCAACAAUGUCGCCAGUUUCCAUGGCA ------..(....)...----...((((...(((--(...))---))...)))).(.(-----(((((((((((.((((.....)))).)))))...))))))).). ( -26.90) >DroSec_CAF1 133366 87 - 1 ------GGUUGGAAAGUGCUGGGAAA-AUGC---GGGGAAAAUGCUGGAAAAAGGG----------GGUGGCGGCGGUGAGCAACAAUGUCGCCAGAUUCCCUGGCA ------..........(((..((...-..((---(.......)))........(((----------..((((((((.((.....)).))))))))..)))))..))) ( -25.20) >consensus ______GGUUGGAAGGUGCUGGGAAA_GUGC____GGGAAAAUGCUGGAAAAAGGGG________GGGUGGCGGCGUUGAGCAACAAUGUCGCCAGAUUCCCUGGCA ...................................(((((....((......))...............((((((((((.....))))))))))...)))))..... (-15.09 = -16.10 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:02 2006