Locus 1075

Sequence ID X_DroMel_CAF1
Location 3,165,263 – 3,165,360
Length 97
Max. P 0.758689
window1746

overview

Window 6

Location 3,165,263 – 3,165,360
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 88.87
Mean single sequence MFE -29.80
Consensus MFE -27.99
Energy contribution -27.90
Covariance contribution -0.09
Combinations/Pair 1.03
Mean z-score -1.35
Structure conservation index 0.94
SVM decision value 0.50
SVM RNA-class probability 0.758689
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3165263 97 - 22224390
AUGGGCCGCAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCUGCCGAGUCUCAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU
.(((((((.((..((((((.(((((...(((((((....)).)))).)..))))))).))))..)))))))))((.((((..........)))))). ( -30.50)
>DroSec_CAF1 122634 97 - 1
AUGGGCCGCAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCUGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU
.(((((((.((..((((((.(((((...(((((((....)).)))).)..))))))).))))..)))))))))((.((((..........)))))). ( -30.50)
>DroSim_CAF1 123252 97 - 1
AUGGGCCGCAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCUGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU
.(((((((.((..((((((.(((((...(((((((....)).)))).)..))))))).))))..)))))))))((.((((..........)))))). ( -30.50)
>DroEre_CAF1 130134 97 - 1
AUGGGCCACAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCGGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU
.(((((((.((..((((((.(((((...((((((......).)))).)..))))))).))))..)))))))))((.((((..........)))))). ( -30.00)
>DroYak_CAF1 130729 74 - 1
AUGGGCCACAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCGGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAG-----------------------
.(((((((.((..((((((.(((((...((((((......).)))).)..))))))).))))..))))))))).----------------------- ( -27.50)
>consensus
AUGGGCCGCAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCUGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU
.(((((((.((..((((((.(((((...((((((......).)))).)..))))))).))))..)))))))))............(((......))) (-27.99 = -27.90 +  -0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:59 2006