Locus 1074

Sequence ID X_DroMel_CAF1
Location 3,156,891 – 3,156,982
Length 91
Max. P 0.958869
window1745

overview

Window 5

Location 3,156,891 – 3,156,982
Length 91
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 82.42
Mean single sequence MFE -24.80
Consensus MFE -12.26
Energy contribution -11.78
Covariance contribution -0.48
Combinations/Pair 1.15
Mean z-score -3.16
Structure conservation index 0.49
SVM decision value 1.49
SVM RNA-class probability 0.958869
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3156891 91 - 22224390
UCGACUCUCCAG--ACCUUAUAAAUAGCAUUUAUAGGGGGGGGGGGGCUGGCUUAUG--GUUUGGUUUUUCCACAAUCAUAAAACUCAGACCAGG
....((((((..--.((((((((((...)))))))))).))))))((((((.(((((--((((((.....))).))))))))...)))).))... ( -32.00)
>DroSec_CAF1 114136 75 - 1
------AACCAG--ACCUUAUAAAUAGCAUUUAUAGGG-G---------GGCUUAUG--GUUUGGUUUUUCCACAACCAUAAAACUCAGACCAGG
------..((..--.((((((((((...))))))))))-(---------((.(((((--((((((.....))).))))))))..)))......)) ( -21.70)
>DroSim_CAF1 115388 76 - 1
------AACCAG--ACCUUAUAAAUAGCAUUUAUAGGGGG---------GGCUUAUG--GUUUGGUUUUUCCACAACCAUAAAACUCAGACCAGG
------..((..--.((((((((((...))))))))))((---------(..(((((--((((((.....))).))))))))..)))......)) ( -24.80)
>DroEre_CAF1 120766 82 - 1
------GUCUGGUUACCUUAUAAAUAGCAUUUAUAGGGGG-------AUGGCUUAUGGUAUAUGGUUUUUCCACAGCCAUAAAACUCGGACCAGG
------..((((((.((((((((((...)))))))))).(-------(.(..(((((((...(((.....)))..)))))))..))).)))))). ( -27.80)
>DroYak_CAF1 122358 75 - 1
------AACCAG--ACCUUAUAAAUAGAAUUUAUAAGGGG----------GCUUAUG--AUAUGGUUUUUCCGCAAUCAUAAAACUCAGACCAGG
------..((..--.((((((((((...))))))))))((----------(.(((((--((.(((.....)))..)))))))..)))......)) ( -17.70)
>consensus
______AACCAG__ACCUUAUAAAUAGCAUUUAUAGGGGG_________GGCUUAUG__GUUUGGUUUUUCCACAACCAUAAAACUCAGACCAGG
........((.....((((((((((...))))))))))..............(((((.....(((.....)))....)))))...........)) (-12.26 = -11.78 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:58 2006