Locus 1073

Sequence ID	X_DroMel_CAF1
Location	3,155,891 – 3,156,004
Length	113
Max. P	0.507737

overview

Window 4

Location	3,155,891 – 3,156,004
Length	113
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	82.88
Mean single sequence MFE	-30.46
Consensus MFE	-18.38
Energy contribution	-20.75
Covariance contribution	2.38
Combinations/Pair	1.20
Mean z-score	-1.79
Structure conservation index	0.60
SVM decision value	-0.05
SVM RNA-class probability	0.507737
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3155891 113 + 22224390
GUGCGGUUCAAAGCAUGUGUGUGUGUGUGUGCGUGAACUCAUAAGCGUGGUAAAAUAAGUAGGCGUCCUGUCUA-UGUAAUCAUGGAACACACAUAAUUGAACCAAAUCAAAUU
....(((((((...((((((((.((((.((......)).))))..((((((...(((..((((...))))..))-)...))))))..))))))))..))))))).......... ( -33.40)
>DroSec_CAF1 113183 106 + 1
GUGGGGUUCAAACCAUGUGUG----UGCGUGCGUGAACUCAUAAGCGUGGUAAAAUAAGUAGGCGUC-UGCCUAAUG---CCAUGGAACACACAUAAUUCAAUCAAAUCAAAUU
((((((((((...(((((...----.)))))..))))))).....(((((((.......(((((...-.))))).))---)))))...)))....................... ( -29.90)
>DroEre_CAF1 119785 106 + 1
GUGCGGUUCAAACCAUGUGCG----UGUGUGUGUGAGUUCAUAAGCGGGGUAAAAUAGGUUGGCGUC-UGCCUAUUA---CCAUGCAACACACAUAAUUGAGCCAAAUCAAAUU
....(((((((....((((.(----(((...((((....)))).(((.((((..((((((.......-.))))))))---)).))).)))).)))).))))))).......... ( -32.00)
>DroYak_CAF1 121383 104 + 1
GUGGGGUUCCAACCAUGUG------UGUGUUUGUGAAUUCAUAAGCGGGGUAAAAUAAGUGGGCGUC-UGCCUAUUG---CCAUGCAGCACAAAUAAUUAAGCCUAAUCAAAUC
...(((((.........((------((((((((((....)))))))..((((......((((((...-.))))))))---)).....)))))........)))))......... ( -26.53)
>consensus
GUGCGGUUCAAACCAUGUGUG____UGUGUGCGUGAACUCAUAAGCGGGGUAAAAUAAGUAGGCGUC_UGCCUAUUG___CCAUGCAACACACAUAAUUGAACCAAAUCAAAUU
....(((((((...(((((((...........(((....)))..((((((.......(((((((.....)))))))....))))))..)))))))..))))))).......... (-18.38 = -20.75 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:57 2006