Locus 1070

Sequence ID X_DroMel_CAF1
Location 3,141,315 – 3,141,422
Length 107
Max. P 0.530410
window1740

overview

Window 0

Location 3,141,315 – 3,141,422
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 77.48
Mean single sequence MFE -27.83
Consensus MFE -14.82
Energy contribution -15.22
Covariance contribution 0.40
Combinations/Pair 1.20
Mean z-score -1.76
Structure conservation index 0.53
SVM decision value -0.01
SVM RNA-class probability 0.530410
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3141315 107 + 22224390
UCCUCGUUUUCUGUUGUCUUCUGUUCUGCUCACCAGCUGAGCUUUAAAAUCCUUGUUGCACUUUGACAUAAAGCUGAAGGAAGCGAAAGAAACAAGUGGAGAUCUUA
(((.(..(((((.(((.(((((.(((.(((....)))..(((((((.......((((.......)))))))))))))))))))))).)))))...).)))....... ( -22.81)
>DroSec_CAF1 99252 101 + 1
UCCUCGCUUUU------UUUCGGAGCUGCUCACCAGCUGAGCUUUAAAAUCCUUGCUGCACUUUGACAAAAAGCUGAAGGAAGCGAAGGAAAAGAGAGGAGAUCUCA
(((((.((((.------(((..((((((((....)))..)))))..)))((((((((...((((..(.....)..))))..))).))))))))).)))))....... ( -30.20)
>DroSim_CAF1 100737 100 + 1
UCCUCGCUUU-------UUUCUGAGCUGCUCACCAGCUGAGCUUUAAAAUCCUUGCUGCACUUUGACAAAAAGCUGAAGGAAGCGAAGGAAAAGAGCGGAGAUCUCA
((..((((((-------(((((..((((((((.....))))).......((((((((..............)))..))))))))...)))))))))))..))..... ( -33.44)
>DroEre_CAF1 105289 99 + 1
UCCUCGUAA--------UUUCUGAGCUGCUCACCAGCUGAGCUUUCAAUUCCCUGCUGUGCUUUGGCAAAAAGCUGAAGGAUGCGAAGGAAACAAGAGGAGAACUUG
(((((....--------....((((..(((((.....))))).)))).((((.(((.((.(((..((.....))..))).)))))..))))....)))))....... ( -30.50)
>DroYak_CAF1 106942 83 + 1
UCCUCGUUU--------CCCUGGAGCUGCUCACCAGCUGAGCUUUAAAAUCCCUGCUGCACUUUGACAAAAAGCUUCAGGAUGCUAAAGGA----------------
((((.((..--------.((((((((((((((.....)))))...........(((........).))...)))))))))..))...))))---------------- ( -22.20)
>consensus
UCCUCGUUUU_______UUUCUGAGCUGCUCACCAGCUGAGCUUUAAAAUCCUUGCUGCACUUUGACAAAAAGCUGAAGGAAGCGAAGGAAAAAAGAGGAGAUCUCA
((((((((...................(((((.....))))).......((((.(((..............)))...)))))))).))))................. (-14.82 = -15.22 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:54 2006