| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 442,951 – 443,067 |
| Length | 116 |
| Max. P | 0.750548 |
| Location | 442,951 – 443,067 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.08 |
| Mean single sequence MFE | -29.18 |
| Consensus MFE | -14.57 |
| Energy contribution | -16.55 |
| Covariance contribution | 1.98 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 442951 116 - 22224390 CCAGGAAAACAGUCCUGUCGCCGGCUCGGCCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCCUAAAUGGAUAAAUGGUAUU-UUGUAUGAAUGGCUCAGCG .(((((......)))))......(((.((((.((((((..((((.........(((((((.((((.....))))..((.....)).....)))))))-)))))))))))))).))). ( -34.00) >DroSec_CAF1 45397 110 - 1 CCUGGAAAACAGUCCUGUCGCCAGUUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU------AUAUU-UUGUUUGAAUGGCUCAGCG .((((...(((....)))..))))....((.((..(((((((((..(((.(((.((((...((((.....)))).))))...))).------)))..-))))..)))))..)).)). ( -29.50) >DroSim_CAF1 24443 110 - 1 CCUGGAAAACAGUCCUGUCGCCAGCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU------AUAUU-UUGUUUGAAUGGCUCAGCA ..(((...(((....)))..)))(((.((((.(((((...((((..(((.(((.((((...((((.....)))).))))...))).------)))..-)))).))))))))).))). ( -31.50) >DroEre_CAF1 55799 91 - 1 CCAG-------------------GCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCGUAAAUGGU------AUAUU-UUGUAUGAAUGGCCCAGCG ....-------------------(((.((((.((((((..((((..(((.(((.((((...((((.....)))).))))...))).------)))..-)))))))))))))).))). ( -29.60) >DroYak_CAF1 43009 93 - 1 CCAA----A-------------UGCUCGGGCGAUUCAUUCGCAAUUCAAUCCAAAUGCCAAGGCGAUGCCCGCUAGCAUAAAUGGU------AUAUU-UUGUAUGAAUGGCCCAGCG ....----.-------------.(((.((((.((((((..((((......(((.((((...((((.....)))).))))...))).------.....-)))))))))).))))))). ( -32.10) >DroAna_CAF1 64171 90 - 1 ----------------------GGCCCGG-AGAUACAUUUGCAAUUUAUUCCAAAUGCCAGGACUAUUUC----AGCAUCAAUUGCAAAUAUAUAUUCUUGAAUGAAUGGCCCAGCG ----------------------((((...-..(((.((((((((((((.(((........))).))....----......)))))))))).)))((((......))))))))..... ( -18.40) >consensus CCAG____A_____________AGCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU______AUAUU_UUGUAUGAAUGGCCCAGCG .......................(((.((((.((((((..((((..(((.(((.((((...((((.....)))).))))...))).......)))...)))))))))))))).))). (-14.57 = -16.55 + 1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:29 2006