Locus 1065

Sequence ID X_DroMel_CAF1
Location 3,114,816 – 3,114,907
Length 91
Max. P 0.759041
window1730

overview

Window 0

Location 3,114,816 – 3,114,907
Length 91
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.15
Mean single sequence MFE -20.69
Consensus MFE -14.69
Energy contribution -14.92
Covariance contribution 0.22
Combinations/Pair 1.11
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.50
SVM RNA-class probability 0.759041
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3114816 91 + 22224390
GAAAAAAGUUAAGGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCCCCCG----------CAAAUAAAAGAA
............((((.....((((((......))))))......))))..(.((((((((.....))))).....)))----------)........... ( -18.10)
>DroPse_CAF1 94205 100 + 1
G-UAAAAGCUGAAGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAGGUUGGUGGGCGAACGGCCCGGGCCCCCCAACUCCCGUUCCAACAAAAACA
.-......((((.........((((((......))))))........))))(((((.((((.....))))(((...)))..........)))))....... ( -24.83)
>DroSim_CAF1 74260 84 + 1
GAAAAAAGUUAAGGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCGCCCG----------CAAAA-------
............(((......((((((......))))))((((..........))))((((.....))))....)))..----------.....------- ( -18.70)
>DroEre_CAF1 74598 84 + 1
GAAAAAACUUUAGGCUACAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCCCCCG----------CAAAA-------
............((((((...((((((......))))))...)).))))..(.((((((((.....))))).....)))----------)....------- ( -19.60)
>DroYak_CAF1 78645 84 + 1
GAAAAAAGUUAAGGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCCCCCG----------CAAAA-------
............((((.....((((((......))))))......))))..(.((((((((.....))))).....)))----------)....------- ( -18.10)
>DroPer_CAF1 96749 96 + 1
G-UAAAAGCUGAAGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAGGUUGGUGGGCGAACGGCCCGGGCCCCCCAACUCCCGUUCCAACAAA----
.-......((((.........((((((......))))))........))))(((((.((((.....))))(((...)))..........)))))...---- ( -24.83)
>consensus
GAAAAAAGUUAAGGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCCCCCG__________CAAAA_______
............((((.....((((((......))))))((((..........))))((((.....))))))))........................... (-14.69 = -14.92 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:44 2006