Locus 1062

Sequence ID X_DroMel_CAF1
Location 3,102,562 – 3,102,658
Length 96
Max. P 0.643867
window1724

overview

Window 4

Location 3,102,562 – 3,102,658
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -42.77
Consensus MFE -30.52
Energy contribution -31.42
Covariance contribution 0.89
Combinations/Pair 1.26
Mean z-score -1.97
Structure conservation index 0.71
SVM decision value 0.23
SVM RNA-class probability 0.643867
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3102562 96 - 22224390
ACGCUGCUGCUGUUCUGGGUGGUGGUGGCGGUGCCGCCGGUGGUGCUGCUGGAGGCCAAAGUCUCGUUCGAAUUGCUGCCAAUGACAGUGGUGGCC
..((..(..(((((...((..(..(((((((..(((....)))..))))).(((((....)))))......))..)..))...)))))..)..)). ( -48.80)
>DroPse_CAF1 79455 96 - 1
ACGCUGCUGCUGUUUUGGGUGUUGGUGGCGUUGCCAGUGCUGCCGCCGCUGGAGGCAAGGGUCUCGUUCGAGUUGCUGCCAAUGACGGUGGUGGCC
..((..(..(((((...(((.(..((((((..((....))...))))))..).(((((....(((....)))))))))))...)))))..)..)). ( -40.80)
>DroSim_CAF1 62402 96 - 1
ACGCUGCUGCUGUUCUGGGUGGUGGUGGCGGUGCCGCCGGUGGUGCUGCUCGAGGCCAAGGUCUCGUUCGAGUUGCUGCCGAUGACAGUGGUGGCC
..((..(..(((((.(.((..((..((((((..(((....)))..)))))((((((....)))))).....)..))..)).).)))))..)..)). ( -50.80)
>DroEre_CAF1 62048 96 - 1
ACGCUGCUGCUGUUCUGGGUGGUGGUGGCUGUGCCGCCGGUGGUGCUGCUAGAGGCCAAGGUCUCGUUCGAGUUGCUGCCAAUGACAGUGGUGGCC
..((..(..(((((...((..(..(((((.(..(((....)))..).))))(((((....))))).......)..)..))...)))))..)..)). ( -46.50)
>DroMoj_CAF1 89879 87 - 1
ACGCUGCUGCUGUUGUUU------GUGUUAGUGUUGCCGGUGCUGCCGCUCGACGCUAGAGUCUCGUUCGAGUUGCUGCCAAUAACGGU---CGCC
.....((.(((((((((.------((.(((((((((.(((.....)))..)))))))))((((((....)))..))))).)))))))))---.)). ( -28.90)
>DroPer_CAF1 81523 96 - 1
ACGCUGCUGCUGUUUUGGGUGUUGGUGGCGUUGCCAGUGCUGCCGCCGCUGGAGGCAAGGGUCUCGUUCGAGUUGCUGCCAAUGACGGUGGUGGCC
..((..(..(((((...(((.(..((((((..((....))...))))))..).(((((....(((....)))))))))))...)))))..)..)). ( -40.80)
>consensus
ACGCUGCUGCUGUUCUGGGUGGUGGUGGCGGUGCCGCCGGUGCUGCCGCUGGAGGCCAAGGUCUCGUUCGAGUUGCUGCCAAUGACAGUGGUGGCC
..((((((((((((...(((...(((((((.((((...)))).))))))).(((((....)))))............)))...)))))))))))). (-30.52 = -31.42 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:39 2006